Sequence 1: | NP_001261138.1 | Gene: | Ppa / 37602 | FlyBaseID: | FBgn0020257 | Length: | 562 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001093719.1 | Gene: | lingo1 / 100101739 | XenbaseID: | XB-GENE-921957 | Length: | 606 | Species: | Xenopus tropicalis |
Alignment Length: | 363 | Identity: | 89/363 - (24%) |
---|---|---|---|
Similarity: | 129/363 - (35%) | Gaps: | 119/363 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 203 PSLFNCLVKRGIKKVQILSLRRS-LKDLVLGVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTL 266
Fly 267 DLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAW----GLKKLKHLNLRSCWHIS 327
Fly 328 DQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKH 392
Fly 393 LARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV--SFCDKISDQALTHIAQGLYRLRSLS 455
Fly 456 LNQCQITDHGMLKIAKALHELENLNIGQCS----------------RITDKGLQTLAE----DLT 500
Fly 501 NLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVR 538 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ppa | NP_001261138.1 | F-box-like | 149..190 | CDD:289689 | |
AMN1 | <226..>334 | CDD:187754 | 29/111 (26%) | ||
leucine-rich repeat | 236..256 | CDD:275381 | 1/19 (5%) | ||
leucine-rich repeat | 263..288 | CDD:275381 | 8/24 (33%) | ||
leucine-rich repeat | 289..314 | CDD:275381 | 8/28 (29%) | ||
leucine-rich repeat | 315..347 | CDD:275381 | 5/31 (16%) | ||
AMN1 | 347..524 | CDD:187754 | 45/198 (23%) | ||
leucine-rich repeat | 348..373 | CDD:275381 | 6/24 (25%) | ||
leucine-rich repeat | 374..398 | CDD:275381 | 8/23 (35%) | ||
leucine-rich repeat | 399..424 | CDD:275381 | 5/24 (21%) | ||
leucine-rich repeat | 425..450 | CDD:275381 | 6/26 (23%) | ||
leucine-rich repeat | 451..475 | CDD:275381 | 6/23 (26%) | ||
leucine-rich repeat | 476..501 | CDD:275381 | 8/44 (18%) | ||
lingo1 | NP_001093719.1 | LRRNT | 27..61 | CDD:214470 | |
LRR 1 | 58..79 | ||||
leucine-rich repeat | 59..82 | CDD:275380 | |||
PLN00113 | 62..>381 | CDD:215061 | 89/363 (25%) | ||
LRR 2 | 82..103 | 3/9 (33%) | |||
leucine-rich repeat | 83..106 | CDD:275380 | 4/12 (33%) | ||
LRR_8 | 106..165 | CDD:338972 | 24/89 (27%) | ||
LRR 3 | 106..127 | 8/27 (30%) | |||
leucine-rich repeat | 107..130 | CDD:275380 | 10/45 (22%) | ||
LRR 4 | 130..151 | 7/22 (32%) | |||
leucine-rich repeat | 131..154 | CDD:275380 | 8/24 (33%) | ||
LRR 5 | 154..175 | 7/26 (27%) | |||
leucine-rich repeat | 155..178 | CDD:275380 | 8/28 (29%) | ||
LRR 6 | 178..199 | 9/51 (18%) | |||
leucine-rich repeat | 179..250 | CDD:275380 | 25/108 (23%) | ||
LRR 7 | 202..223 | 7/21 (33%) | |||
leucine-rich repeat | 203..226 | CDD:275380 | 8/23 (35%) | ||
LRR 8 | 250..271 | 5/20 (25%) | |||
leucine-rich repeat | 251..274 | CDD:275380 | 6/24 (25%) | ||
LRR 9 | 274..295 | 6/20 (30%) | |||
leucine-rich repeat | 275..298 | CDD:275380 | 6/22 (27%) | ||
LRR 10 | 298..319 | 6/21 (29%) | |||
leucine-rich repeat | 299..322 | CDD:275380 | 6/23 (26%) | ||
LRR 11 | 322..343 | 4/20 (20%) | |||
leucine-rich repeat | 323..343 | CDD:275380 | 4/19 (21%) | ||
Ig | 425..500 | CDD:386229 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |