DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ppa and si:dkey-192l18.9

DIOPT Version :9

Sequence 1:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster
Sequence 2:XP_001344855.1 Gene:si:dkey-192l18.9 / 100005961 ZFINID:ZDB-GENE-120709-25 Length:476 Species:Danio rerio


Alignment Length:556 Identity:132/556 - (23%)
Similarity:221/556 - (39%) Gaps:121/556 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GAGAG--------GAPSWAMDELYQQTELPGLTRTGATTTH--HHLLRFTP---YALHHRPPHHQ 94
            ||..|        |:.|.:.|........|..:...|.|:.  ...:| ||   ..|:..||   
Zfish     2 GANNGKQCESEGKGSSSISSDVSSSTEHTPSKSHKNAATSEDSDQSMR-TPSPALILNPNPP--- 62

  Fly    95 LQTLPPALYLQHAAAAAAAAAAAAAHAQHHHHHHHHLPHRPASPESPPPVEGTHISNLFPE-LLE 158
             ||:|      :...::.....|..|.          |....|..:.||  .|.:.::.|: :|.
Zfish    63 -QTVP------NGRESSLGETVALIHP----------PPATRSKSTKPP--HTALIDILPDPVLL 108

  Fly   159 QIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKRSSPSLFNCLVKRGIKKVQILSLR 223
            .|..:|....|...|:||..|.:.::...:|..:..                     ..::|:..
Zfish   109 HILSYLSTPHLCLCARVCRRWYNLSWDPRLWSTIRL---------------------NGELLNAD 152

  Fly   224 RSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSVDLPN----LKTLDLSLCKQITDTSLGRIAQ 284
            |:||.|.                       |....|.||    |:|:..|.|::::|..|..||:
Zfish   153 RALKVLT-----------------------HRLCQDTPNVCLTLETVVASGCRRLSDRGLRVIAR 194

  Fly   285 HLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQ-- 347
            ....|..||:.||.|::|..:..:......|:||::..|..::...:         |.||::|  
Zfish   195 CCPELRCLEVAGCYNVSNDAVFDVVSKCPNLEHLDVSGCPKVTCISL---------TEEGSVQHT 250

  Fly   348 --------LEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLA-RMPKLEQLN 403
                    |.||.:.||..|.|:.|..||.....|..:.|..|:.:||..|:.|| ....|.:|:
Zfish   251 PLHGQQIGLRYLNMTDCVSLEDKGLKTIAIHCPRLTHLYLRRCIRITDESLRQLALHCTALRELS 315

  Fly   404 LRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQ-ITDHGML 467
            |..|..:.|.|:..:......:..|.|:.|.:|:|..|.::|:...|||.|:...|: :||.|:.
Zfish   316 LSDCHLVGDFGLREVARLEGRLRYLSVAHCMRITDVGLRYVARYCPRLRYLNARGCEGLTDQGLS 380

  Fly   468 KIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMK-LPKLQKLN 531
            .:|:....|.::::|:|..::|.||:.||.....|:.:.|.||..|:.:|:..:.: .|:||.||
Zfish   381 YLARNCPRLRSIDVGRCPLVSDAGLEVLAHCCKMLRRLSLRGCESLTGRGLMALAEGCPELQLLN 445

  Fly   532 LGLWLVRXC---------VHHDCNACAAKEAARGSY 558
                 |: |         |...|..|..:......|
Zfish   446 -----VQECDVPPEALRLVRQHCRRCVIEHTIPAFY 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 9/41 (22%)
AMN1 <226..>334 CDD:187754 26/111 (23%)
leucine-rich repeat 236..256 CDD:275381 1/19 (5%)
leucine-rich repeat 263..288 CDD:275381 8/24 (33%)
leucine-rich repeat 289..314 CDD:275381 7/24 (29%)
leucine-rich repeat 315..347 CDD:275381 7/31 (23%)
AMN1 347..524 CDD:187754 55/189 (29%)
leucine-rich repeat 348..373 CDD:275381 10/24 (42%)
leucine-rich repeat 374..398 CDD:275381 8/24 (33%)
leucine-rich repeat 399..424 CDD:275381 6/24 (25%)
leucine-rich repeat 425..450 CDD:275381 7/24 (29%)
leucine-rich repeat 451..475 CDD:275381 8/24 (33%)
leucine-rich repeat 476..501 CDD:275381 8/24 (33%)
si:dkey-192l18.9XP_001344855.1 F-box-like 99..145 CDD:289689 10/66 (15%)
leucine-rich repeat 114..138 CDD:275381 6/23 (26%)
leucine-rich repeat 139..172 CDD:275381 10/76 (13%)
leucine-rich repeat 173..198 CDD:275381 8/24 (33%)
leucine-rich repeat 199..220 CDD:275381 7/20 (35%)
LRR_CC 222..246 CDD:197685 6/32 (19%)
leucine-rich repeat 225..258 CDD:275381 8/41 (20%)
leucine-rich repeat 259..284 CDD:275381 10/24 (42%)
AMN1 280..465 CDD:187754 53/189 (28%)
leucine-rich repeat 285..310 CDD:275381 8/24 (33%)
leucine-rich repeat 311..336 CDD:275381 6/24 (25%)
leucine-rich repeat 337..362 CDD:275381 7/24 (29%)
leucine-rich repeat 363..388 CDD:275381 8/24 (33%)
leucine-rich repeat 389..414 CDD:275381 8/24 (33%)
leucine-rich repeat 415..440 CDD:275381 6/24 (25%)
leucine-rich repeat 441..465 CDD:275381 8/28 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.