DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4250 and litaf

DIOPT Version :10

Sequence 1:NP_001246468.1 Gene:CG4250 / 37599 FlyBaseID:FBgn0034761 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001002184.1 Gene:litaf / 431731 ZFINID:ZDB-GENE-040704-23 Length:163 Species:Danio rerio


Alignment Length:165 Identity:44/165 - (26%)
Similarity:59/165 - (35%) Gaps:52/165 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PQAP--------GFQAPPSYD---------------------SAP--------QQVYPQLHQGQG 39
            |.||        |...|||||                     |.|        .|:||...|||.
Zfish     6 PTAPPMENTTLVGHPPPPSYDEISGANPYYPAGPYPPADMKASGPPPYPTQEYNQMYPPTAQGQP 70

  Fly    40 VILQGENTENYESIGN--NAPPNVLGQCPSVATCPSCGVRRETKVEFEPSTKTHL----LALLIC 98
            |      |....::..  ..|..|.|..|..|.||.|.....|::|:.......|    ||:..|
Zfish    71 V------TSPVVAVQTVYVQPGLVFGNVPVQAHCPVCSQSVITRLEYSSGPLVWLSCAGLAVFGC 129

  Fly    99 MLGGICCCCIPYCTDSCQSAKHTCTSCGAYVGTYK 133
            :.|   ||.||:|.:..:...|.|.:|.:.:|.:|
Zfish   130 IYG---CCLIPFCIEDLKDVTHHCPNCSSVLGVHK 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4250NP_001246468.1 zf-LITAF-like 66..133 CDD:463165 21/70 (30%)
litafNP_001002184.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 4/16 (25%)
PPxY motif. /evidence=ECO:0000250|UniProtKB:Q99732 22..25 2/2 (100%)
zf-LITAF-like 93..161 CDD:463165 21/70 (30%)
Membrane-binding amphipathic helix. /evidence=ECO:0000305 116..136 7/22 (32%)

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