DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4250 and B0348.2

DIOPT Version :9

Sequence 1:NP_001246468.1 Gene:CG4250 / 37599 FlyBaseID:FBgn0034761 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_503127.2 Gene:B0348.2 / 181936 WormBaseID:WBGene00015152 Length:86 Species:Caenorhabditis elegans


Alignment Length:72 Identity:20/72 - (27%)
Similarity:31/72 - (43%) Gaps:8/72 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 VLG----QC--PSVATCPSCGVRRETKVEFEPSTKTHLLALLICMLGGICCCCIPYCTDSCQSAK 119
            |||    :|  |....|..|...:.|:.|.:......::.::.|:|....|..:  |.||.:...
 Worm     7 VLGPTLTECTEPHQVFCQKCQCNQVTRTETQLGACWWVVFIIGCLLFWPICYWL--CCDSSKDTM 69

  Fly   120 HTCTSCG 126
            |.|.|||
 Worm    70 HYCPSCG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4250NP_001246468.1 zf-LITAF-like 66..133 CDD:287559 16/61 (26%)
B0348.2NP_503127.2 LITAF 18..83 CDD:197841 16/61 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1564782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23292
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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