DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk9 and cdk13

DIOPT Version :9

Sequence 1:NP_477226.2 Gene:Cdk9 / 37586 FlyBaseID:FBgn0019949 Length:404 Species:Drosophila melanogaster
Sequence 2:XP_002940845.2 Gene:cdk13 / 100489599 XenbaseID:XB-GENE-6040279 Length:1391 Species:Xenopus tropicalis


Alignment Length:376 Identity:155/376 - (41%)
Similarity:224/376 - (59%) Gaps:29/376 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PYCDE------------SNKYEKVAKIGQGTFGEVFKAREKKGNKKFVAMKKVLMDNEKEGFPIT 94
            |.|.|            .:|::.:..||:||:|:|:||:: |...:.||:|||.:||||||||||
 Frog   578 PRCGEILEKEIDWGKRCVDKFDIIGIIGEGTYGQVYKAKD-KDTGEMVALKKVRLDNEKEGFPIT 641

  Fly    95 ALREIRILQLLKHENVVNLIEICRTKATATN--GYRSTFYLVFDFCEHDLAGLLSNMNVKFSLGE 157
            |:|||:||:.|.|::::|:.||...|..|.:  ..:..|||||::.:|||.|||.:..|.|:...
 Frog   642 AIREIKILRQLNHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNEHH 706

  Fly   158 IKKVMQQLLNGLYYIHSNKILHRDMKAANVLITKHGILKLADFGLARAFSIPKNESKNRYTNRVV 222
            ||..|:||:.||.|.|....||||:|.:|:|:...|.:|||||||||.:|   :|....|||:|:
 Frog   707 IKSFMRQLMEGLDYCHKRNFLHRDIKCSNILLNNRGQIKLADFGLARLYS---SEESRPYTNKVI 768

  Fly   223 TLWYRPPELLLGDRNYGPPVDMWGAGCIMAEMWTRSPIMQGNTEQQQLTFISQLCGSFTPDVWPG 287
            ||||||||||||:..|.|.:|:|..|||:.|::|:.||.|.|.|..||..||::|||..|.|||.
 Frog   769 TLWYRPPELLLGEERYSPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRMCGSPCPAVWPD 833

  Fly   288 VEELELYKSIELPKNQKRRVKERLRPYVKDQTGCDLLDKLLTLDPKKRIDADTALNHDFFW-TDP 351
            |.:|..:.:::..|..:|:::|.. .::.: ...||.|.:|.|||.||..|:.||..:|.. .||
 Frog   834 VIKLPYFNTMKPKKQYRRKLREEF-VFIPN-AALDLFDHMLALDPNKRCTAEQALLCEFLRDVDP 896

  Fly   352 MPSDLSKMLSQHL---QSMFEYLAQPRRSNQMRNYHQQLTTMNQKPQDNSM 399
                 |||....|   |...|..::.||..:.......||......:|:|:
 Frog   897 -----SKMTPPDLPLWQDCHELWSKKRRRQKQLGMGDDLTVPKVPRKDSSL 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk9NP_477226.2 STKc_CDK9 37..347 CDD:270848 140/318 (44%)
cdk13XP_002940845.2 STKc_CDK12 590..891 CDD:270847 137/306 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925637at2759
OrthoFinder 1 1.000 - - FOG0000444
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R186
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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