DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17807 and carm1

DIOPT Version :9

Sequence 1:NP_611690.2 Gene:CG17807 / 37585 FlyBaseID:FBgn0034748 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_001003645.1 Gene:carm1 / 445251 ZFINID:ZDB-GENE-040724-77 Length:588 Species:Danio rerio


Alignment Length:152 Identity:34/152 - (22%)
Similarity:56/152 - (36%) Gaps:49/152 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 EQQNVHEVYDKIADHFSE--TRHTPWPQVSEFLDSFEPQSVVLDIGCGNGKYLSCNPLLLSVGCD 422
            :|||:.:.|.:...:...  ..||      :|.|     .||||:|||:|        :||....
Zfish   132 QQQNMMQDYVRTGTYQRAILQNHT------DFKD-----KVVLDVGCGSG--------ILSFFAA 177

  Fly   423 RAQGLLAVGRRK-----------------GQNVFRCDCLVVP--VRSSSIDGCISIAV---IHHL 465
            :|      |.||                 ..|......:|:|  |...|:...:.|.:   :.::
Zfish   178 QA------GARKVYAVEASTMAQHAEVLVNSNRLSERVVVIPGKVEEVSLPEQVDIIISEPMGYM 236

  Fly   466 ATKERRLAALQEMARVLRPGGR 487
            ...||.|.:.....:.|:|.|:
Zfish   237 LFNERMLESYLHAKKFLKPSGK 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17807NP_611690.2 RRM_ALKBH8 40..119 CDD:240877
2OG-FeII_Oxy 136..322 CDD:304390
Methyltransf_11 400..490 CDD:285453 24/110 (22%)
carm1NP_001003645.1 CARM1 8..112 CDD:288395
PRMT5 <146..409 CDD:282971 30/138 (22%)
AdoMet_MTases 162..263 CDD:100107 25/111 (23%)
Transactivation domain. /evidence=ECO:0000250 473..588
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0500
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.