DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4329 and Cfap52

DIOPT Version :9

Sequence 1:NP_611687.1 Gene:CG4329 / 37582 FlyBaseID:FBgn0034745 Length:1171 Species:Drosophila melanogaster
Sequence 2:NP_082239.2 Gene:Cfap52 / 71860 MGIID:1919110 Length:620 Species:Mus musculus


Alignment Length:769 Identity:136/769 - (17%)
Similarity:243/769 - (31%) Gaps:320/769 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 KEVIYPVEGVLAFHDYVQNKQRFLRLPEDTRPEVISISSHRKLLAVVERHSKNGRYISIYELATL 107
            :.:|||:...:.......|:|.||.             .|...::.| ..||.|.||:       
Mouse    37 EHLIYPLGCTVLIQAINTNEQNFLH-------------GHGNNVSCV-TISKEGDYIA------- 80

  Fly   108 KKRRHLELPSNHRNAEIQQMIFTNDSRSVALITRPPEETLIMLVLDKTSTVIEGRATIPGSHGGA 172
                         :.::..|.|..|   :.|......|.:..|.|.|               |..
Mouse    81 -------------SGQVTFMGFKAD---IILWDFKKRELIARLSLHK---------------GKI 114

  Fly   173 ECIAGNPNDCNFMAVGG--ERTLLLMSKSER---------GFSISNNLKVKY-RVTSMAFLS--- 222
            |.:|.:|||...:::||  :.::::.|.::|         |.::.|...|.: |.....|::   
Mouse   115 EALAFSPNDLYLVSLGGPDDGSVVVWSIAKRDAICGSPAAGLNVGNATSVVFSRCRDEMFVTAGN 179

  Fly   223 -------LDL-------------------LMIGTSDDQL----------ILVENGEQKLAQKASD 251
                   |||                   |..|.:||..          ||..|.:.||.     
Mouse   180 GTIRVWELDLPNRKIWPTECQTGQMKRIVLSTGMADDDSFFYLGTTTGDILKMNPKTKLL----- 239

  Fly   252 ADTVDLMIDQEVFDRDKELQEQRFLPTQAVSLPDRRVLCM----TAFPKGFAYIIFNRAFVFERV 312
            |||..:        :||            .||....:.|:    .....|...:||.::..::.:
Mouse   240 ADTGPV--------KDK------------FSLGVSALRCLKMGGLLVGSGAGLLIFCKSPSYKPI 284

  Fly   313 SKFKFERK-TILTVP-------TNLYAEHMYQILNLAIDHKQETVIVTTSHCQIYVGILIVPETL 369
            .|.:.:.. |.:|:.       ......|:|:: |.. |.|:  .::.|.|.:....|:.     
Mouse   285 KKVQLQGGITSITLRGEGHQFFVGTEESHIYRV-NFT-DFKE--TLIATCHFEAVQDIVF----- 340

  Fly   370 KTKQLKFEPLGVLIHTGEIIAMSVCAWKPIIMTASRDQTIRIWNYETALVELVRKFQVDVNIVEL 434
                    |.|    |.|:.|  .||.|          .||:|:                     
Mouse   341 --------PFG----TAELFA--TCAKK----------DIRVWH--------------------- 360

  Fly   435 SLTGQMAAIGFSDQLRITQIFMDDLNIVKTYNFPHCNAVRYSNFGHMMAAAYDNN---------- 489
                   .:...:.||||...|.            |:.:.:...|..:.:|:|:.          
Mouse   361 -------TMSKRELLRITVPNMT------------CHGIDFMRDGKSIISAWDDGKIRAFAPESG 406

  Fly   490 ---IAITSVYKLDVLINLKGHNGIVLSVAWSRTDKFLISGGAEGAIYLWDIETGARLQEIVQKGT 551
               ..|.|.:::.           |.::|.:...|.:||||.||.:.:|.:  |.:.|::.:...
Mouse   407 RLMYTINSAHRIG-----------VTAIATTSDCKRIISGGGEGEVRVWQV--GCQTQKLEEALK 458

  Fly   552 EY-VTISC---STNDPLTIYAGTSIGTI---------------------------REFQ------ 579
            |: .::||   ..|:...:.|.|. ||.                           .|||      
Mouse   459 EHKSSVSCIRVKKNNEECVTASTD-GTCIIWDLVRLRRNQMILANTLFQCVCYHPEEFQIITSGT 522

  Fly   580 ----------DSTLMREITIPSRTKGSVSDVCLARS---------DLIMFVADH-EGNLFNMQLP 624
                      |.:::||  :.....||::.:.:.:.         |.::.|.|: ||.:.::   
Mouse   523 DRKIAYWEVFDGSVIRE--LEGSLSGSINGMDITQEGGHFVTGGHDHLVKVWDYNEGEVTHV--- 582

  Fly   625 FLEAGGGTFTNFRFFDGPVNKLRFSYDGTLLFAISNKGTLAIWAMDNIEGKVPY 678
                |.|       ..|.:..:|.|.....:.::|..|.:..|       |.|:
Mouse   583 ----GVG-------HSGNIMAMRISPGNQYIVSVSADGAILRW-------KYPF 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4329NP_611687.1 WD40 repeat 124..167 CDD:293791 8/42 (19%)
WD40 repeat 173..211 CDD:293791 11/48 (23%)
WD40 repeat 215..248 CDD:293791 13/71 (18%)
WD40 repeat 288..324 CDD:293791 6/40 (15%)
WD40 <328..667 CDD:225201 70/408 (17%)
WD40 repeat 338..383 CDD:293791 8/44 (18%)
WD40 384..668 CDD:295369 60/353 (17%)
WD40 repeat 388..426 CDD:293791 7/37 (19%)
WD40 repeat 430..466 CDD:293791 5/35 (14%)
WD40 repeat 470..505 CDD:293791 6/47 (13%)
WD40 repeat 511..548 CDD:293791 12/36 (33%)
WD40 repeat 554..576 CDD:293791 7/51 (14%)
WD40 repeat 597..634 CDD:293791 7/46 (15%)
WD40 repeat 643..669 CDD:293791 5/25 (20%)
Apolipoprotein 701..864 CDD:279749
MSP1_C 784..>1011 CDD:284802
Ax_dynein_light <958..1026 CDD:287215
Cfap52NP_082239.2 WD40 10..399 CDD:225201 91/511 (18%)
WD40 30..399 CDD:295369 91/511 (18%)
WD 1 62..106 12/67 (18%)
WD40 repeat 68..109 CDD:293791 12/64 (19%)
WD 2 109..150 12/55 (22%)
WD40 repeat 114..159 CDD:293791 10/44 (23%)
WD 3 156..195 7/38 (18%)
WD40 repeat 162..240 CDD:293791 15/82 (18%)
WD40 repeat 257..302 CDD:293791 7/44 (16%)
WD40 277..617 CDD:225201 75/449 (17%)
WD 4 288..327 7/42 (17%)
WD 5 330..369 13/95 (14%)
WD40 346..615 CDD:295369 60/357 (17%)
WD 6 372..411 5/50 (10%)
WD40 repeat 380..414 CDD:293791 4/33 (12%)
WD 7 415..454 12/51 (24%)
WD40 repeat 421..459 CDD:293791 11/39 (28%)
WD 8 459..498 8/39 (21%)
WD40 repeat 464..492 CDD:293791 7/28 (25%)
WD 9 500..541 6/42 (14%)
WD40 repeat 500..541 CDD:293791 6/42 (14%)
WD 10 543..582 7/38 (18%)
WD40 repeat 548..584 CDD:293791 5/42 (12%)
WD 11 585..620 9/48 (19%)
WD40 repeat 590..616 CDD:293791 5/32 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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