DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4329 and Eml1

DIOPT Version :9

Sequence 1:NP_611687.1 Gene:CG4329 / 37582 FlyBaseID:FBgn0034745 Length:1171 Species:Drosophila melanogaster
Sequence 2:XP_017170657.1 Gene:Eml1 / 68519 MGIID:1915769 Length:885 Species:Mus musculus


Alignment Length:706 Identity:125/706 - (17%)
Similarity:226/706 - (32%) Gaps:225/706 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KEDVKRASLSNS----TVTIRPRLIYGLRS-DVIGNIHFNLTKEVIYPVEGVLAFHDYVQNKQRF 65
            |:.|...||...    |..::...:||.|. |...|::...|.|.:|.:..|:..::..:..||.
Mouse   272 KDQVDSYSLEAKAELPTKRLKLEWVYGYRGRDCRNNLYLLPTGETVYFIASVVVLYNVEEQLQRH 336

  Fly    66 LRLPED------TRPEVISISSHRKLLAVVERHSKNGR----YISIYELATLKKRRHLELPSNHR 120
            .....|      ..|:.|:|::.:     |...||:|:    ::.|::..||.....:.:....|
Mouse   337 YAGHNDDVKCLAVHPDRITIATGQ-----VAGTSKDGKQLPPHVRIWDSVTLNTLHVIGIGFFDR 396

  Fly   121 NAEIQQMIFTNDSRSVALITRPPEETLIMLVLDKTSTVIEGRATIPGSHGGAECIAGNPNDCNFM 185
              .:..:.|:..:....|.........::.|.|....  |..|.:..|:........:|.|.|.:
Mouse   397 --AVTCIAFSKSNGGGHLCAVDDSNDHVLSVWDWQKE--ERLADVKCSNEAVFAADFHPTDTNII 457

  Fly   186 AVGGE--------------------------RTLLLMSKSERGFSI----SNNL--------KVK 212
            ...|:                          :.:|.::.||.|.:|    |.|:        ::.
Mouse   458 VTCGKSHLYFWTLEGNSLNKKQGLFEKQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRIS 522

  Fly   213 YRVT--------SMAFLSLDLLMIGTSDDQLILVENGEQKLAQKASDADTVDLMIDQEVFDRDKE 269
            |.|.        ::..|....|:.|...|:.::..||..:...||                   |
Mouse   523 YAVQGAHEGGIFALCMLRDGTLVSGGGKDRRLISWNGNYQKLHKA-------------------E 568

  Fly   270 LQEQRFLPTQAVSLPDRRVLCMTAFPKGFAYIIFNRAFVFERVSKFKFERKTILTVPTNLYAEHM 334
            :.|| |.|.:.|:                                                    
Mouse   569 IPEQ-FGPIRTVA---------------------------------------------------- 580

  Fly   335 YQILNLAIDHKQETVIVTTSHCQIYVGILIVPETLKTKQLKFEPL--GVLIHTGEIIAMSVCAWK 397
                    :.|...:::.|:...:..|         |....|.|:  |   ||.|:..:::.|.|
Mouse   581 --------EGKGNVILIGTTRNFVLQG---------TLSGDFTPITQG---HTDELWGLAIHASK 625

  Fly   398 PIIMTASRDQTIRIWNYETALVELVRKFQVDVNIVE-------LSLTGQMAAIG--------FSD 447
            |..:|...|:...:|       :.|....|...|:|       ...:|.:.|:|        |..
Mouse   626 PQFLTCGHDKHATLW-------DAVGHRPVWDKIIEDPAQSSGFHPSGSVVAVGTLTGRWFVFDT 683

  Fly   448 QLRITQIFMDDLNIVKTYNFPHCNAVRYSNFGHMMA-AAYDNNIAITSV----YKLDVLINLKGH 507
            :.:       ||..|.|......:.:|||..|:.:| .::||.|.|..|    .|...:....||
Mouse   684 ETK-------DLVTVHTDGNEQLSVMRYSPDGNFLAIGSHDNCIYIYGVTDNGRKYTRVGKCSGH 741

  Fly   508 NGIVLSVAWSRTDKFLISGGAEGAIYLWDIETGARLQEIVQKGT----EYVTISCSTNDPLTIYA 568
            :..:..:.||...:||:|...:..|..|   ..:..:::|...|    |:.|.:|:....:    
Mouse   742 SSFITHLDWSVNSQFLVSNSGDYEILYW---VPSACKQVVSVETTRDIEWATYTCTLGFHV---- 799

  Fly   569 GTSIGTIREFQDSTLMREITIPSRTKGSVSDVCLARSDLIMFVADHEGNLFNMQLP 624
               .|...|..|.|             .::.||.|....::...|..|.:.....|
Mouse   800 ---FGVWPEGSDGT-------------DINAVCRAHERKLLCTGDDFGKVHLFSYP 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4329NP_611687.1 WD40 repeat 124..167 CDD:293791 6/42 (14%)
WD40 repeat 173..211 CDD:293791 11/75 (15%)
WD40 repeat 215..248 CDD:293791 7/40 (18%)
WD40 repeat 288..324 CDD:293791 0/35 (0%)
WD40 <328..667 CDD:225201 63/323 (20%)
WD40 repeat 338..383 CDD:293791 7/46 (15%)
WD40 384..668 CDD:295369 56/265 (21%)
WD40 repeat 388..426 CDD:293791 7/37 (19%)
WD40 repeat 430..466 CDD:293791 10/50 (20%)
WD40 repeat 470..505 CDD:293791 11/39 (28%)
WD40 repeat 511..548 CDD:293791 7/36 (19%)
WD40 repeat 554..576 CDD:293791 3/21 (14%)
WD40 repeat 597..634 CDD:293791 6/28 (21%)
WD40 repeat 643..669 CDD:293791
Apolipoprotein 701..864 CDD:279749
MSP1_C 784..>1011 CDD:284802
Ax_dynein_light <958..1026 CDD:287215
Eml1XP_017170657.1 HELP 255..328 CDD:367505 14/55 (25%)
WD40 335..723 CDD:392136 83/502 (17%)
WD40 repeat 345..393 CDD:293791 10/52 (19%)
WD40 repeat 398..438 CDD:293791 6/41 (15%)
WD40 repeat 444..486 CDD:293791 4/41 (10%)
WD40 repeat 492..527 CDD:293791 9/34 (26%)
WD40 repeat 533..598 CDD:293791 16/144 (11%)
WD40 repeat 617..652 CDD:293791 8/41 (20%)
WD40 692..>884 CDD:392136 36/171 (21%)
WD40 repeat 698..739 CDD:293791 11/40 (28%)
WD40 repeat 745..769 CDD:293791 6/23 (26%)
WD40 repeat 812..851 CDD:293791 6/28 (21%)
WD40 repeat 857..884 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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