DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4329 and Cfap52

DIOPT Version :9

Sequence 1:NP_611687.1 Gene:CG4329 / 37582 FlyBaseID:FBgn0034745 Length:1171 Species:Drosophila melanogaster
Sequence 2:NP_001094438.2 Gene:Cfap52 / 303233 RGDID:1308151 Length:620 Species:Rattus norvegicus


Alignment Length:769 Identity:135/769 - (17%)
Similarity:243/769 - (31%) Gaps:320/769 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 KEVIYPVEGVLAFHDYVQNKQRFLRLPEDTRPEVISISSHRKLLAVVERHSKNGRYISIYELATL 107
            :.::||:...:.......|:|.||.             .|...::.| ..||.|.|::       
  Rat    37 EHLVYPLGCTVLIQAINTNEQNFLH-------------GHGNNVSCV-TISKEGDYVA------- 80

  Fly   108 KKRRHLELPSNHRNAEIQQMIFTNDSRSVALITRPPEETLIMLVLDKTSTVIEGRATIPGSHGGA 172
                         :.::..|.|..|   :.|......|.:..|.|.|               |..
  Rat    81 -------------SGQVTFMGFKAD---IILWDFKKRELIARLSLHK---------------GKI 114

  Fly   173 ECIAGNPNDCNFMAVGG--ERTLLLMSKSER---------GFSISNNLKVKY-RVTSMAFLS--- 222
            |.:|.:|||...:::||  :.::::.|.::|         |.::.|...|.: |.....|::   
  Rat   115 EALAFSPNDLYLVSLGGPDDGSVVVWSIAKRDAICGSPAAGLNVGNATSVVFSRCRDEMFVTAGN 179

  Fly   223 -------LDL-------------------LMIGTSDDQL----------ILVENGEQKLAQKASD 251
                   |||                   :..|.:||..          ||..|.:.||.     
  Rat   180 GTIRVWELDLPNRKIWPTECQTGQMKRIVMSSGMADDDSFFYLGTTTGDILKINPKTKLL----- 239

  Fly   252 ADTVDLMIDQEVFDRDKELQEQRFLPTQAVSLPDRRVLCM----TAFPKGFAYIIFNRAFVFERV 312
            |||..:        :||            .||....:.|:    .....|...:||.::..::.:
  Rat   240 ADTGPM--------KDK------------FSLGVSALRCLKMGGLLVGSGAGLLIFCKSPSYKPI 284

  Fly   313 SKFKFERK-TILTVP-------TNLYAEHMYQILNLAIDHKQETVIVTTSHCQIYVGILIVPETL 369
            .|.:.:.. |.:|:.       ......|:|:: |.. |.|:  .::.|.|.:....|:.     
  Rat   285 KKLQLQGGITSITLRGEGHQFFVGTEESHIYRV-NFT-DFKE--TLIATCHFEAVQDIVF----- 340

  Fly   370 KTKQLKFEPLGVLIHTGEIIAMSVCAWKPIIMTASRDQTIRIWNYETALVELVRKFQVDVNIVEL 434
                    |.|    |.|:.|  .||.|          .||:|:                     
  Rat   341 --------PFG----TAELFA--TCAKK----------DIRVWH--------------------- 360

  Fly   435 SLTGQMAAIGFSDQLRITQIFMDDLNIVKTYNFPHCNAVRYSNFGHMMAAAYDNN---------- 489
                   .:...:.||||...|.            |:.:.:...|..:.:|:|:.          
  Rat   361 -------TMSKRELLRITVPNMT------------CHGIDFMRDGKSIISAWDDGKIRAFAPESG 406

  Fly   490 ---IAITSVYKLDVLINLKGHNGIVLSVAWSRTDKFLISGGAEGAIYLWDIETGARLQEIVQKGT 551
               ..|.|.:::.           |.::|.:...|.:||||.||.:.:|.|  |.:.|::.:...
  Rat   407 RLMYTINSAHRIG-----------VTAIATTSDCKRIISGGGEGEVRVWQI--GCQTQKLEEALK 458

  Fly   552 EY-VTISC---STNDPLTIYAGTSIGTI---------------------------REFQ------ 579
            |: .::||   ..|:...:.|.|. ||.                           .|||      
  Rat   459 EHKSSVSCIRVKKNNEECVTASTD-GTCIIWDLVRLRRNQMILANTLFQCVCYHPEEFQIITSGT 522

  Fly   580 ----------DSTLMREITIPSRTKGSVSDVCLARS---------DLIMFVADH-EGNLFNMQLP 624
                      |.:::||  :.....|||:.:.:.:.         |.::.|.|: ||.:.::   
  Rat   523 DRKIAYWEVFDGSVIRE--LEGSLSGSVNGMDITQEGEHFVTGGHDHLIKVWDYNEGEVTHV--- 582

  Fly   625 FLEAGGGTFTNFRFFDGPVNKLRFSYDGTLLFAISNKGTLAIWAMDNIEGKVPY 678
                |.|       ..|.:..:|.|.....:.::|..|.:..|       |.|:
  Rat   583 ----GVG-------HSGNIMGIRISPGNQYIVSVSADGAILRW-------KYPF 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4329NP_611687.1 WD40 repeat 124..167 CDD:293791 8/42 (19%)
WD40 repeat 173..211 CDD:293791 11/48 (23%)
WD40 repeat 215..248 CDD:293791 12/71 (17%)
WD40 repeat 288..324 CDD:293791 6/40 (15%)
WD40 <328..667 CDD:225201 72/408 (18%)
WD40 repeat 338..383 CDD:293791 8/44 (18%)
WD40 384..668 CDD:295369 62/353 (18%)
WD40 repeat 388..426 CDD:293791 7/37 (19%)
WD40 repeat 430..466 CDD:293791 5/35 (14%)
WD40 repeat 470..505 CDD:293791 6/47 (13%)
WD40 repeat 511..548 CDD:293791 13/36 (36%)
WD40 repeat 554..576 CDD:293791 7/51 (14%)
WD40 repeat 597..634 CDD:293791 8/46 (17%)
WD40 repeat 643..669 CDD:293791 5/25 (20%)
Apolipoprotein 701..864 CDD:279749
MSP1_C 784..>1011 CDD:284802
Ax_dynein_light <958..1026 CDD:287215
Cfap52NP_001094438.2 WD40 9..399 CDD:225201 88/511 (17%)
WD40 30..399 CDD:295369 88/511 (17%)
WD40 repeat 67..108 CDD:293791 10/64 (16%)
WD40 repeat 115..157 CDD:293791 10/41 (24%)
WD40 repeat 162..199 CDD:293791 6/36 (17%)
WD40 repeat 205..302 CDD:293791 22/121 (18%)
WD40 repeat 253..307 CDD:293791 7/53 (13%)
WD40 277..617 CDD:225201 77/449 (17%)
WD40 346..615 CDD:295369 62/357 (17%)
WD40 repeat 380..414 CDD:293791 4/33 (12%)
WD40 repeat 421..459 CDD:293791 12/39 (31%)
WD40 repeat 464..492 CDD:293791 7/28 (25%)
WD40 repeat 500..541 CDD:293791 6/42 (14%)
WD40 repeat 548..584 CDD:293791 6/42 (14%)
WD40 repeat 590..616 CDD:293791 5/32 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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