DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps20 and Chmp6

DIOPT Version :9

Sequence 1:NP_611686.2 Gene:Vps20 / 37581 FlyBaseID:FBgn0034744 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_001099326.1 Gene:Chmp6 / 287873 RGDID:1565325 Length:200 Species:Rattus norvegicus


Alignment Length:212 Identity:104/212 - (49%)
Similarity:151/212 - (71%) Gaps:13/212 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGALFGKTSKKTAPSRITDQDKAVLQLKQQRDRLKQYQKRIETQLENDRLLARKCLQQGRKDRAK 65
            ||.|||:..:    ||:|:||:|:||||||||:|:|||||:..|||.:|.|||:.|:.|||:|||
  Rat     1 MGNLFGRKKQ----SRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKERAK 61

  Fly    66 LLLRKKKYQESLLTNADKQLENLEKLAADIEFAQVEMKVLDGLKAGNAALKKVHEMLDIDEVERI 130
            |||:||:|:|.||...:.|:.:||.:...|||.|:||||::||:.||..|.|:|:::.|:|||||
  Rat    62 LLLKKKRYREQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSIEEVERI 126

  Fly   131 MDETREGIEKQQEIDAILTDVLTTQDEEDVLAELDALEAEEEQQKGAQLPDVPTEDLPIPAEIES 195
            :|||:|.:|.|::||.:|....|.:||:.:|.||:|:..|:     .:||:||:|.||    ..|
  Rat   127 LDETQEAVEYQRQIDELLAGSFTQEDEDAILEELNAITQEQ-----IELPEVPSEPLP----DTS 182

  Fly   196 VEEPAKTKATKKVLVEA 212
            .|.|||.::.:..||.|
  Rat   183 PEAPAKARSRQAELVAA 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps20NP_611686.2 Snf7 22..186 CDD:281366 83/163 (51%)
Chmp6NP_001099326.1 Snf7 18..177 CDD:397437 83/163 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345226
Domainoid 1 1.000 176 1.000 Domainoid score I3529
eggNOG 1 0.900 - - E1_KOG2910
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11607
Inparanoid 1 1.050 203 1.000 Inparanoid score I3677
OMA 1 1.010 - - QHG54090
OrthoDB 1 1.010 - - D1287094at2759
OrthoFinder 1 1.000 - - FOG0003546
OrthoInspector 1 1.000 - - oto95786
orthoMCL 1 0.900 - - OOG6_102807
Panther 1 1.100 - - LDO PTHR22761
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4514
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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