DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps20 and vps20

DIOPT Version :9

Sequence 1:NP_611686.2 Gene:Vps20 / 37581 FlyBaseID:FBgn0034744 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_596691.1 Gene:vps20 / 2540725 PomBaseID:SPBC215.14c Length:226 Species:Schizosaccharomyces pombe


Alignment Length:212 Identity:68/212 - (32%)
Similarity:115/212 - (54%) Gaps:19/212 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SRITDQDKAVLQLKQQRDRLKQYQKRIE--TQLENDRLLARKCLQQGRKDRAKLLLRKKKYQESL 77
            |:|.|:|:::|.:|:|||:|.:|.||:|  .|||.|  :|||||:...|..|...|:.||....|
pombe     6 SKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEID--IARKCLRDSDKRGALRALKAKKLYSGL 68

  Fly    78 LTNADKQLENLEKLAADIEFAQVEMKVLDGLKAGNAALKKVHEMLDIDEVERIMDETREGIEKQQ 142
            :|....||.|:|:|.:.|||..::..|:.||:.|...::::...:.::.|.||.::..|.:....
pombe    69 ITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVD 133

  Fly   143 EIDAILTDVLTTQDEEDVLAELDALEAEEEQQK-------------GAQ-LPDVPTEDLPIPAEI 193
            |::.:|...::...|:::..|||:|..|:|.:|             |.. ||.||.:: .||:..
pombe   134 EVNDMLQGRMSRDQEDEIQEELDSLIREQEDEKVKDLEKPGFTPSTGVDVLPSVPLKN-AIPSLD 197

  Fly   194 ESVEEPAKTKATKKVLV 210
            ||..:.|....|...:|
pombe   198 ESFPKAASVSNTSSAVV 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps20NP_611686.2 Snf7 22..186 CDD:281366 57/179 (32%)
vps20NP_596691.1 Snf7 13..170 CDD:304451 52/158 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 92 1.000 Domainoid score I2014
eggNOG 1 0.900 - - E1_KOG2910
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I1630
OMA 1 1.010 - - QHG54090
OrthoFinder 1 1.000 - - FOG0003546
OrthoInspector 1 1.000 - - oto100592
orthoMCL 1 0.900 - - OOG6_102807
Panther 1 1.100 - - LDO PTHR22761
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5973
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.860

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