DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps20 and chmp6a

DIOPT Version :9

Sequence 1:NP_611686.2 Gene:Vps20 / 37581 FlyBaseID:FBgn0034744 Length:212 Species:Drosophila melanogaster
Sequence 2:XP_001922343.2 Gene:chmp6a / 100147988 ZFINID:ZDB-GENE-100812-5 Length:199 Species:Danio rerio


Alignment Length:210 Identity:101/210 - (48%)
Similarity:151/210 - (71%) Gaps:12/210 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGALFGKTSKKTAPSRITDQDKAVLQLKQQRDRLKQYQKRIETQLENDRLLARKCLQQGRKDRAK 65
            ||.:||:..:   |||:||||:|:||||||||:||||:|:|..|||.:|.||::.|:.|:::||.
Zfish     1 MGNVFGRQGR---PSRVTDQDRAILQLKQQRDKLKQYRKKITLQLERERRLAKQLLKDGKRERAL 62

  Fly    66 LLLRKKKYQESLLTNADKQLENLEKLAADIEFAQVEMKVLDGLKAGNAALKKVHEMLDIDEVERI 130
            |||:||:||:.||...|.|::|||:|..||||||:|:||::.||.||..||::||::.::|||:|
Zfish    63 LLLKKKRYQDQLLDKTDIQIDNLERLVQDIEFAQIEIKVIESLKDGNDCLKQMHEVMSLEEVEKI 127

  Fly   131 MDETREGIEKQQEIDAILTDVLTTQDEEDVLAELDALEAEEEQQKGAQLPDVPTEDLPIPAEIES 195
            :::|:|.||.|::||.:|...|..:||:.|||||:.|...|:    ..|.::||:  |.||..|.
Zfish   128 LEDTKEAIEYQKQIDDLLAGCLKEEDEDAVLAELETLTQGED----TALSELPTD--PQPAAPEG 186

  Fly   196 VEEPAKTKATKKVLV 210
            ..|   .|..:::||
Zfish   187 GTE---IKTEREMLV 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps20NP_611686.2 Snf7 22..186 CDD:281366 82/163 (50%)
chmp6aXP_001922343.2 Snf7 19..179 CDD:304451 82/165 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586315
Domainoid 1 1.000 187 1.000 Domainoid score I3268
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I3625
OMA 1 1.010 - - QHG54090
OrthoDB 1 1.010 - - D1287094at2759
OrthoFinder 1 1.000 - - FOG0003546
OrthoInspector 1 1.000 - - otm25271
orthoMCL 1 0.900 - - OOG6_102807
Panther 1 1.100 - - O PTHR22761
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4514
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.910

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