DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS16 and rpl4

DIOPT Version :9

Sequence 1:NP_001286731.1 Gene:RpS16 / 37580 FlyBaseID:FBgn0034743 Length:148 Species:Drosophila melanogaster
Sequence 2:NP_998272.1 Gene:rpl4 / 337090 ZFINID:ZDB-GENE-030131-9034 Length:375 Species:Danio rerio


Alignment Length:60 Identity:16/60 - (26%)
Similarity:26/60 - (43%) Gaps:17/60 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LLKVNGRPLEQI-------EPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYA 85
            |:...|..:|:|       :.||..||..:..:||.|:..|..||:          ::||
Zfish   136 LVMAKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIK----------KVYA 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS16NP_001286731.1 PTZ00086 2..148 CDD:185437 16/60 (27%)
rpl4NP_998272.1 Ribosomal_L4 10..265 CDD:294231 16/60 (27%)
Ribos_L4_asso_C 276..344 CDD:291072
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0088
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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