DRSC/TRiP Functional Genomics Resources

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Protein Alignment nsr and Qki

DIOPT Version :10

Sequence 1:NP_611682.1 Gene:nsr / 37577 FlyBaseID:FBgn0034740 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_001401394.1 Gene:Qki / 499022 RGDID:1584886 Length:341 Species:Rattus norvegicus


Alignment Length:353 Identity:87/353 - (24%)
Similarity:149/353 - (42%) Gaps:92/353 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 EEQNQDQPTQDQPTYQPRLNEVAQKFLADLDEERKRLSAEFPLCAL------LIDESVDRVFSTG 67
            |.:.:.:||.|              :|..|..::|.:|:....|.:      |:||.:.||    
  Rat     6 ETKEKPKPTPD--------------YLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRV---- 52

  Fly    68 RIPGKEFYADVYH--------QRP------MKITQKVFVPVNKFPKFNFARKILGPKGNSVRRLK 118
               .|:.|.|..:        :.|      :::.:|::|||.::|.|||..:||||:|.:.::|:
  Rat    53 ---RKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLE 114

  Fly   119 EETNCKIVIKGRSSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRK 183
            .||.|||:::|:.||||:.|||:.|  |.|.:.||::||.:.::..........::..|:.|::|
  Rat   115 AETGCKIMVRGKGSMRDKKKEEQNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKK 177

  Fly   184 YLIP--DDNDDVWHEQQRELMEMN---PESAKKSNGLNMA-------------------PYRSIF 224
            .|:|  :..|.:...|..||..:|   .::..||..|..:                   |..::.
  Rat   178 LLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALR 242

  Fly   225 DKTIGGNR--------------NGAPKYNNQIRRVTENPREVADMEEVEYDYDEHRMPPSRPSLG 275
            ..|..|..              ||.|.....|  |...|.  |.:....|:| .:.:.|:...| 
  Rat   243 TPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAI--VPPGPE--AGLIYTPYEY-PYTLAPATSIL- 301

  Fly   276 FEYSKPPPSMTATNATPFK----RAYPY 299
             ||...|..:....||..:    |.:||
  Rat   302 -EYPIEPSGVLGAVATKVRRHDMRVHPY 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nsrNP_611682.1 KH-I_KHDRBS 82..183 CDD:411812 37/106 (35%)
QkiNP_001401394.1 STAR_dimer 10..64 CDD:435414 16/74 (22%)
Qua1 domain, involved in homodimerization. /evidence=ECO:0000250|UniProtKB:Q17339 11..82 17/91 (19%)
KH-I_Hqk 81..183 CDD:411893 39/103 (38%)
Qua2 domain, involved in RNA binding. /evidence=ECO:0000250|UniProtKB:Q96PU8 182..213 7/30 (23%)
PHA03247 <211..314 CDD:223021 19/109 (17%)
SH3-binding 276..279 0/2 (0%)
Quaking_NLS 312..341 CDD:435421 5/17 (29%)
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:Q9QYS9 324..330 3/5 (60%)

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