DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3927 and Sf1

DIOPT Version :10

Sequence 1:NP_611681.1 Gene:CG3927 / 37576 FlyBaseID:FBgn0034739 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_001104263.1 Gene:Sf1 / 117855 RGDID:620645 Length:639 Species:Rattus norvegicus


Alignment Length:232 Identity:57/232 - (24%)
Similarity:106/232 - (45%) Gaps:43/232 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PSELTEKQNQDQPTYQ---PRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIP 65
            |....::....:|.|.   .|||....:....|:.||..|..|  :.||              .|
  Rat    73 PPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITE--MVAL--------------NP 121

  Fly    66 GKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRD 130
            ..:|.|| |:....::..||.:|.:::|:.||.|.::||:||:|:.:::|.:.||:|:|:.|:::
  Rat   122 DFKPPAD-YKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE 185

  Fly   131 ----RNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYL-----IPDDND 186
                |...:.|....:|.:|.:             .|.....:..|:.:||..|     .|:|.:
  Rat   186 GKVGRKDGQMLPGEDEPLHALV-------------TANTMENVKKAVEQIRNILKQGIETPEDQN 237

  Fly   187 DVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAI 223
            |:...|.|||..:|....:..|.: :.|::|:..::|
  Rat   238 DLRKMQLRELARLNGTLREDDNRI-LRPWQSSETRSI 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3927NP_611681.1 KH-I_KHDRBS 77..178 CDD:411812 25/104 (24%)
Sf1NP_001104263.1 MSL5 17..257 CDD:227503 53/213 (25%)
ZnF_C2HC 278..293 CDD:197667
Blue background indicates that the domain is not in the aligned region.

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