DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10384 and Khdrbs1

DIOPT Version :10

Sequence 1:NP_611673.3 Gene:CG10384 / 37567 FlyBaseID:FBgn0034731 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_569089.1 Gene:Khdrbs1 / 117268 RGDID:621459 Length:443 Species:Rattus norvegicus


Alignment Length:200 Identity:90/200 - (45%)
Similarity:118/200 - (59%) Gaps:29/200 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LSALEERSLKGSEKL----KMLDITRDKPVKVAVKVAVPVRDHPKFNFVGKLLGPKGNSMKRLQE 67
            ||...|:..||..|.    ..||:...|.:|:..:|.:||:.:||||||||:|||:||::|||||
  Rat   125 LSVEIEKIQKGESKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQE 189

  Fly    68 DTMCKMAVLGRGSMRDRRKEEELRGSGDSRYAHLFEDLHVEISTFAAPAEAHARIAYALAEVRRF 132
            :|..|::|||:|||||:.||||||..||.:||||..||||.|..|..|.||:|.:|:|:.||::|
  Rat   190 ETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKF 254

  Fly   133 LVPDYHDDIRQEQMWEMQALTSTPALGAHSLEDSHSPTINSSSQVGGTTNSSSNGAS-------- 189
            ||||..|||.|||..|:..|...|           .|:......|.|      .||:        
  Rat   255 LVPDMMDDICQEQFLELSYLNGVP-----------EPSRGRGVSVRG------RGAAPPPPPVPR 302

  Fly   190 GRGLG 194
            |||:|
  Rat   303 GRGVG 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10384NP_611673.3 KH-I_KHDRBS 43..131 CDD:411812 54/87 (62%)
Khdrbs1NP_569089.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..95
Involved in homodimerization. /evidence=ECO:0000250|UniProtKB:Q07666 100..260 72/134 (54%)
Qua1 102..153 CDD:465079 8/27 (30%)
KH-I_KHDRBS1 152..257 CDD:411896 61/104 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..317 8/33 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 326..345
Interaction with HNRNPA1. /evidence=ECO:0000250|UniProtKB:Q07666 351..443
Sam68-YY 366..415 CDD:465182
Interaction with ZBTB7A. /evidence=ECO:0000250|UniProtKB:Q07666 400..420
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..443
Blue background indicates that the domain is not in the aligned region.

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