DRSC/TRiP Functional Genomics Resources

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Protein Alignment qkr58E-3 and khdrbs1

DIOPT Version :9

Sequence 1:NP_001246460.1 Gene:qkr58E-3 / 37559 FlyBaseID:FBgn0022984 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_001017045.1 Gene:khdrbs1 / 549799 XenbaseID:XB-GENE-479347 Length:360 Species:Xenopus tropicalis


Alignment Length:315 Identity:98/315 - (31%)
Similarity:149/315 - (47%) Gaps:61/315 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 EVAQKFLADLDEERQRLSADFPLCALLIDEAVDRVYCTG--RIPGKEFYADVYKQKPMKITQKVF 85
            |...|:|.:|..|:..|...|.....|:.:.::|:...|  :...::.|.|::..|.||:.:::.
 Frog     2 ETETKYLPELMAEKDSLDPSFTHAMSLLGKEIERLKKGGDAKKDEEDTYLDLFSHKNMKLKERIL 66

  Fly    86 VPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQLRSTGDPRYAHLQKD 150
            :|||.||||||.||||||:||:::||||||..||::.|:.|:||:.|||:||..|||:|:||..|
 Frog    67 IPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMD 131

  Fly   151 LFLEVSTVATPAECYARIAYALAEIRKYLIP---------DKNDEVSHEQLRELMEMD---PESA 203
            |.:.:.....|.|.|.|:|:|:.|::|:|:|         |..|::..||..||..::   ||.:
 Frog   132 LHVFIEVFGPPCESYTRMAHAMEEVKKFLVPLTPESFSYQDMMDDICQEQFMELSYLNGAPPEQS 196

  Fly   204 KNIHGPNLEAYRSVFDKKFGGNSNGAPKYINLIKRAAENPPEVDDVEEVAYEYEHRMPPKRP--- 265
            :                   |.:.|.|      .|....||..     .|.....|..|.||   
 Frog   197 R-------------------GGTRGGP------SRGRGGPPPA-----AAPSSRGRAGPLRPLVP 231

  Fly   266 ---------PTGYEYSKPRPSIIPTNAAAYKRPYPTDMKRMREPPIKSYKPNPYT 311
                     ..|...|:|.|....:..|...|.....::|:..||     |.|.|
 Frog   232 RGAPGRGAISRGASVSRPVPPSSASRGAPAGRARGAAIQRISLPP-----PAPET 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qkr58E-3NP_001246460.1 SF1_like-KH 81..200 CDD:239088 58/130 (45%)
khdrbs1NP_001017045.1 Qua1 6..58 CDD:406639 11/51 (22%)
KH-I 57..162 CDD:412160 54/104 (52%)
Sam68-YY 282..331 CDD:406871 98/315 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 180 1.000 Inparanoid score I3883
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1012406at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9347
Panther 1 1.100 - - O PTHR11208
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.160

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