DRSC/TRiP Functional Genomics Resources

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Protein Alignment babos and sdk1a

DIOPT Version :9

Sequence 1:NP_001286719.1 Gene:babos / 37557 FlyBaseID:FBgn0034724 Length:196 Species:Drosophila melanogaster
Sequence 2:XP_009297968.1 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2245 Species:Danio rerio


Alignment Length:137 Identity:28/137 - (20%)
Similarity:50/137 - (36%) Gaps:17/137 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 DQSAPSPQTKSPNPVASEKINKTLSVTGIRGEDVVLKCDVGSNLHSSDVVVLWYFGDNVISNGKN 110
            |.::.:|...:|          .|.:|...|......|.|..   :....::|.....::::|. 
Zfish   504 DVTSMAPAFTAP----------PLDITVTDGAVAAFTCRVSG---APKPAIVWRRDTQILASGS- 554

  Fly   111 LVQ-PNFKLDANYDLTILKASPQVAGSYLCKVLPSGSVVNTKVTIAEHSLDAI-APESSTSAAGS 173
             || |.|.|..:..|.|.....|..|:|.|....|...:|...::...|..:| :|.:.......
Zfish   555 -VQIPRFTLLESGGLQIQPVVLQDTGNYTCYAANSEGAINASASLTVWSRTSISSPPTDRRVIKG 618

  Fly   174 ASSFLGC 180
            .::.|.|
Zfish   619 TTAILEC 625

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
babosNP_001286719.1 ig 70..154 CDD:278476 19/84 (23%)
IG_like 70..154 CDD:214653 19/84 (23%)
sdk1aXP_009297968.1 I-set 125..208 CDD:254352
Ig 125..204 CDD:299845
IG_like 222..302 CDD:214653
Ig 236..287 CDD:299845
Ig_3 322..394 CDD:290638
I-set 323..412 CDD:254352