DRSC/TRiP Functional Genomics Resources

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Protein Alignment babos and Opcml

DIOPT Version :9

Sequence 1:NP_001286719.1 Gene:babos / 37557 FlyBaseID:FBgn0034724 Length:196 Species:Drosophila melanogaster
Sequence 2:XP_017450901.1 Gene:Opcml / 116597 RGDID:620635 Length:354 Species:Rattus norvegicus


Alignment Length:179 Identity:44/179 - (24%)
Similarity:72/179 - (40%) Gaps:38/179 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 DDDQMQADD-DFDYGGE-------DQSAPSPQ----TKSPNPVASEKINKTLSVTGIRGEDVVLK 82
            :|:.::..| ..|..||       |.:||..:    |.:..|..|:..|..:||    |:..:|.
  Rat   183 EDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSV----GQKGILS 243

  Fly    83 CDVGSNLHSSDVVVL---WYFGDNVISNGKNLVQPNFKLDANYDLTILKASPQVAGSYLCKVLPS 144
            |:      :|.|.:.   |:..|..::.|.:.|:...|...: .||....|.:..|:|.|.....
  Rat   244 CE------ASAVPMAEFQWFKEDTRLATGLDGVRIENKGRIS-TLTFFNVSEKDYGNYTCVATNK 301

  Fly   145 GSVVNTKVTIAEHSLDAIAPESSTSAAG-------SASSFLGCTVLAST 186
            ....|..:|:.|     |:|.|:.:..|       |||..|.|..|:.|
  Rat   302 LGNTNASITLYE-----ISPSSAVAGPGAVIDGVNSASRALACLWLSGT 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
babosNP_001286719.1 ig 70..154 CDD:278476 19/86 (22%)
IG_like 70..154 CDD:214653 19/86 (22%)
OpcmlXP_017450901.1 Ig 44..132 CDD:416386
Ig strand A' 44..49 CDD:409353
Ig strand B 51..59 CDD:409353
CDR1 59..63 CDD:409353
FR2 64..70 CDD:409353
Ig strand C 64..70 CDD:409353
CDR2 71..83 CDD:409353
Ig strand C' 72..76 CDD:409353
Ig strand C' 80..83 CDD:409353
FR3 84..118 CDD:409353
Ig strand D 87..94 CDD:409353
Ig strand E 97..103 CDD:409353
Ig strand F 110..118 CDD:409353
CDR3 119..123 CDD:409353
Ig strand G 123..132 CDD:409353
FR4 125..132 CDD:409353
Ig_3 135..206 CDD:404760 5/22 (23%)
Ig strand A 135..138 CDD:409353
Ig strand A' 144..148 CDD:409353
Ig strand B 151..160 CDD:409353
Ig strand C 165..170 CDD:409353
Ig strand C' 171..174 CDD:409353
Ig strand F 198..206 CDD:409353 2/7 (29%)
Ig_3 223..300 CDD:404760 21/87 (24%)
putative Ig strand A 224..230 CDD:409353 2/5 (40%)
Ig strand B 240..244 CDD:409353 1/3 (33%)
Ig strand C 253..257 CDD:409353 0/3 (0%)
Ig strand E 279..283 CDD:409353 1/4 (25%)
Ig strand F 293..298 CDD:409353 2/4 (50%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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