DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13506 and Dscam1

DIOPT Version :9

Sequence 1:NP_001286718.1 Gene:CG13506 / 37556 FlyBaseID:FBgn0034723 Length:503 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:595 Identity:109/595 - (18%)
Similarity:211/595 - (35%) Gaps:166/595 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LYVSC--AGSP---IDADVKGTDY-QDDEYEYGD--DTDDDDTQIIDVTKNH------------- 63
            :::.|  .|:|   |..::.|... .:|.|:.|.  ..:.|....:::|..|             
  Fly   450 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 514

  Fly    64 ----AEQEAP------PYFDVTDLRVEAK---PGDDVILNCDARNFQLSNAVVWYK-NRIIIANG 114
                ||..|.      ||.    .::|.|   .|:.:|:.|....:.: :::||.: ||.:    
  Fly   515 KVGVAEHSAKLNVYGLPYI----RQMEKKAIVAGETLIVTCPVAGYPI-DSIVWERDNRAL---- 570

  Fly   115 QNPISQRVQCMLNNSILLRNVS-PEDSDDYYC------------------EILPQRV--RQHTAL 158
              ||:::.:...|.::::.||. ..|...|.|                  .:|||.|  .....:
  Fly   571 --PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLI 633

  Fly   159 RVGARLSILCD----DRDI-----------------------TDR-------------------- 176
            .:|..:.:.|.    ||.|                       |:|                    
  Fly   634 NMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGR 698

  Fly   177 -------------------------------SQTFRQGDHHKLECRT--YLPDNATIKWSFNDLN 208
                                           .:.|.||...|:||:.  :.....|.|.:..|..
  Fly   699 DTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 763

  Fly   209 GQPSSV---DN---QNGVIILDNVDEKNAGDYQCLADDGSRHPPHGTVHIDVQYSPIVSTHRHNV 267
            |:...:   ||   :.|.:.:||:.:.|.|.|.|.|.:|........:.|.||..|..:....|.
  Fly   764 GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQ 828

  Fly   268 NTEKGATAELYCNYRA-KPIGRSYFIKDGKTLQLSD-KYSLKDSVHNDHNRTTLIVREVTDSDLG 330
            ...:|..|.|.|..:. ||||..:.:.:.:....:| :|::::.:.:....::|.::....||..
  Fly   829 TARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSA 893

  Fly   331 EYLCQVENAIGSNEVKVH--VSYNPETP-QFEDMTVEGNKVTLHWL--VRSHQLLSEAMLDYQLT 390
            .:.|...||.||::..::  |...||.| ..:.:...|..|.|.|.  ...:..|...:::::.:
  Fly   894 LFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRS 958

  Fly   391 GSYTWSTVQVLETHRHNNTDNIWKITHQLELSRGVWHARVKTKNTKGWSHFSNDHVFEIPEDSEV 455
            .: :||.:..:....|.....:.|::     ....::.|:..:|..|.|..|........|::..
  Fly   959 RA-SWSEIDRVIVPGHTTEAQVQKLS-----PATTYNIRIVAENAIGTSQSSEAVTIITAEEAPS 1017

  Fly   456 DKDEEVELPP 465
            .|.:.:::.|
  Fly  1018 GKPQNIKVEP 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13506NP_001286718.1 IG_like 79..146 CDD:214653 17/89 (19%)
IGc2 83..146 CDD:197706 15/82 (18%)
IG_like 176..254 CDD:214653 23/136 (17%)
Ig 176..239 CDD:299845 20/121 (17%)
I-set 258..349 CDD:254352 20/94 (21%)
Ig 275..348 CDD:143165 17/74 (23%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352 14/76 (18%)
IGc2 446..517 CDD:197706 11/66 (17%)
I-set 533..618 CDD:254352 17/95 (18%)
IGc2 544..607 CDD:197706 15/69 (22%)
Ig 641..714 CDD:143165 6/72 (8%)
IGc2 735..804 CDD:197706 20/68 (29%)
I-set 819..914 CDD:254352 20/94 (21%)
Ig 833..921 CDD:299845 21/87 (24%)
FN3 918..1011 CDD:238020 17/98 (17%)
FN3 1018..1116 CDD:238020 2/10 (20%)
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.