DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13506 and Dscaml1

DIOPT Version :9

Sequence 1:NP_001286718.1 Gene:CG13506 / 37556 FlyBaseID:FBgn0034723 Length:503 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:621 Identity:117/621 - (18%)
Similarity:213/621 - (34%) Gaps:172/621 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QLYVSCA--GSP-------IDAD--VKGTDYQDDEYEYGDDT-----DDDDTQIID------VTK 61
            |..:.||  |:|       :|.:  |:...::.::|...|.|     :....||.|      ..:
  Rat   482 QFSLMCAAKGAPPPTVTWALDDEPVVRDGSHRTNQYTMSDGTTISHMNVTGPQIRDGGVYRCTAR 546

  Fly    62 N---HAEQEA------PPYFDVTDLR-VEAKPGDDVILNCDARNFQLSNAVVWYKNRIIIANGQN 116
            |   .||.:|      ||  .:..:| :.|..|.|.::||....:.. .::.|||:.:::     
  Rat   547 NSVGSAEYQARINVRGPP--SIRAMRNITAVAGRDTLINCRVIGYPY-YSIKWYKDALLL----- 603

  Fly   117 PISQRVQCMLNNSILLRNVSP-EDSDDYYCEIL--PQ-RVRQ--HTALRV--------------G 161
            |.:.|.....|.::.|.:|.. .|..:|.|.:|  || .:.|  |.|::|              |
  Rat   604 PDNHRQVVFENGTLKLTDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFPPASIG 668

  Fly   162 ARLSILC--DDRDITDR------SQTFRQGDHHKLECRTYL------------------------ 194
            ..|.|.|  ...|:..|      .|....|....:|.:.::                        
  Rat   669 QLLYIPCVVSSGDMPIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVSLKHNGNYTCIASNAA 733

  Fly   195 --------------------PDN--------------------ATIKWSFNDLNGQPSSVDN--- 216
                                |:|                    ..:.|.....:|.|.....   
  Rat   734 ATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVMWKHAKGSGNPQQYHPVPL 798

  Fly   217 -------QNGVIILDNVDEKNAGDYQCLADDGSRHPPHGTVHIDVQYSPIVSTHRHNVNTEKGAT 274
                   .|..:::.:|.|::.|.|.|.|.:|........:.:.|:...::::|.:.....||..
  Rat   799 TGRIQILPNSSLLIRHVLEEDIGYYLCQASNGVGTDISKAMFLTVKIPAMITSHPNTTIAIKGHA 863

  Fly   275 AELYCNYRAKPIGRSYFIK--DGKTLQLSD---KYSLKDSVHNDHNRTTLIVREVTDSDLGEYLC 334
            .||.|..|.:   |...|:  .|.|:...|   :|::....:.|...:||.::.....|...:.|
  Rat   864 KELNCTARGE---RPIIIRWEKGDTVIDPDRVMRYAIATKDNGDEVVSTLKLKPADRGDSVFFSC 925

  Fly   335 QVENAIGSNE--VKVHVSYNPETPQFEDMTVEGNKVTLHWLVR--SHQLLSEAMLDYQLTGSYTW 395
            ...|:.|.:.  :::.|...|:.|:.|...|:...:.|.|..|  .:.:::...::|: ..|.:|
  Rat   926 HAINSYGEDRGLIQLTVQEPPDPPELEIREVKARSMNLRWTQRFDGNSIITGFDIEYK-NKSDSW 989

  Fly   396 STVQVLETHRHNNTDNIWKITHQLEL----SRGVWHARVKTKNTKGWSHFSNDHVFEIPEDSEVD 456
            ...|        :|.||....:|..:    ...|:..|:.:.|..|.|..|.:......|.:...
  Rat   990 DFKQ--------STRNISPTINQANIVDLHPASVYSIRMYSFNKIGRSEPSKELTISTEEAAPDG 1046

  Fly   457 KDEEVELPPDEIVQAGIMPMSKGAASSMQRLNVGVI 492
            ...:|.|.|  :....|....|.....:|.   |:|
  Rat  1047 PPMDVTLQP--VTSQSIQVTWKAPKKELQN---GII 1077

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13506NP_001286718.1 IG_like 79..146 CDD:214653 15/67 (22%)
IGc2 83..146 CDD:197706 14/63 (22%)
IG_like 176..254 CDD:214653 17/157 (11%)
Ig 176..239 CDD:299845 15/142 (11%)
I-set 258..349 CDD:254352 20/97 (21%)
Ig 275..348 CDD:143165 17/79 (22%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652
IGc2 101..168 CDD:197706
Ig 183..276 CDD:299845
IG_like 195..276 CDD:214653
I-set 291..369 CDD:254352
IGc2 298..359 CDD:197706
IGc2 386..447 CDD:197706
I-set 466..560 CDD:254352 17/77 (22%)
Ig 466..556 CDD:299845 16/73 (22%)
IGc2 577..635 CDD:197706 15/63 (24%)
IG_like 665..744 CDD:214653 9/78 (12%)
Ig 673..739 CDD:143165 7/65 (11%)
I-set 748..843 CDD:254352 13/94 (14%)
Ig7_DSCAM 765..843 CDD:143211 11/77 (14%)
I-set 849..942 CDD:254352 20/95 (21%)
Ig 861..949 CDD:299845 20/90 (22%)
FN3 945..1039 CDD:238020 21/102 (21%)
FN3 1046..1143 CDD:238020 8/37 (22%)
fn3 1151..1237 CDD:278470
FN3 1249..1340 CDD:238020
IGc2 1364..1428 CDD:197706
FN3 1442..1532 CDD:238020
FN3 1546..1618 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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