DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13506 and Lsamp

DIOPT Version :10

Sequence 1:NP_611666.2 Gene:CG13506 / 37556 FlyBaseID:FBgn0034723 Length:503 Species:Drosophila melanogaster
Sequence 2:NP_001401926.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:290 Identity:59/290 - (20%)
Similarity:107/290 - (36%) Gaps:53/290 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 TDLRVEAKPGDDVILNCDARNFQLSNAVVWYKNRIIIANGQN--PISQRVQC----MLNNSILLR 133
            || .:..:.||..||.|...:  .::.|.|.....||..|.:  .:..||:.    .|..|:.::
  Rat    55 TD-NITVRQGDTAILRCVVED--KNSKVAWLNRSGIIFAGHDKWSLDPRVELEKRHALEYSLRIQ 116

  Fly   134 NVSPEDSDDYYCEIL----PQRVRQHTALRVGARLSILCDDRDITDRSQTFRQGDHHKLECRTYL 194
            .|...|...|.|.:.    |:..:.:..::|..::|.:..|       .|..:|.:..|.|..  
  Rat   117 KVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSD-------VTVNEGSNVTLVCMA-- 172

  Fly   195 PDNATIKWSFNDLNGQPSSV-------------DNQNGVIILDNVDEKNAGDYQCLADDGSRHPP 246
                         ||:|..|             :.:...:.:..:..:.:|.|:|.|.:......
  Rat   173 -------------NGRPEPVITWRHLTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSAD 224

  Fly   247 HGTVHIDVQYSPIVSTHRHNVNTEKGATAELYCNYRAKPIGRSYFIKDGKTLQLSDKYSLKDSVH 311
            ...|.:.|.|.|.::..:.|..| .|..|.|.|...|.|.....:.:|...:..::...:|.:  
  Rat   225 VKQVKVTVNYPPTITESKSNEAT-TGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKST-- 286

  Fly   312 NDHNRTTLIVREVTDSDLGEYLCQVENAIG 341
              ..:::|.|..||:...|.|.|...|.:|
  Rat   287 --EGQSSLTVTNVTEEHYGNYTCVAANKLG 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13506NP_611666.2 Ig_3 69..146 CDD:464046 19/76 (25%)
Ig_3 173..238 CDD:464046 11/77 (14%)
Ig 258..349 CDD:472250 20/84 (24%)
Ig strand B 275..279 CDD:409353 2/3 (67%)
Ig strand C 288..292 CDD:409353 0/3 (0%)
Ig strand E 317..321 CDD:409353 1/3 (33%)
Ig strand F 331..336 CDD:409353 2/4 (50%)
LsampNP_001401926.1 Ig 55..145 CDD:472250 21/92 (23%)
Ig strand B 66..70 CDD:409382 2/3 (67%)
Ig strand C 78..82 CDD:409382 1/3 (33%)
Ig strand E 111..115 CDD:409382 1/3 (33%)
Ig strand F 125..130 CDD:409382 2/4 (50%)
Ig strand G 138..141 CDD:409382 0/2 (0%)
Ig_3 148..218 CDD:464046 14/91 (15%)
Ig_3 235..311 CDD:464046 18/80 (23%)

Return to query results.
Submit another query.