DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13506 and rig-3

DIOPT Version :9

Sequence 1:NP_001286718.1 Gene:CG13506 / 37556 FlyBaseID:FBgn0034723 Length:503 Species:Drosophila melanogaster
Sequence 2:NP_509155.1 Gene:rig-3 / 180958 WormBaseID:WBGene00004370 Length:487 Species:Caenorhabditis elegans


Alignment Length:484 Identity:90/484 - (18%)
Similarity:170/484 - (35%) Gaps:148/484 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 EAKPGDDVILNCDARNFQLSNAVVWYKNRIIIANGQNPISQRVQCM------LNNSILL------ 132
            ||.|   ::::.:|.::.        .|.|.:..|:..:   |.|:      ::.|.||      
 Worm    31 EANP---IVISSEAMDYD--------TNTITVREGKKLM---VSCVFESDEQIHKSDLLWKQANG 81

  Fly   133 RNVSPEDSDDYYCEILPQRVRQH--TALRVGARLSILCDDRDITDRSQTFRQGDHHKLECRTYLP 195
            .|:..|.:...:..||.::..:|  |:|...:     ...||....:.|.|.......|....|.
 Worm    82 NNIDGESNPSLFSVILNEKGSKHRKTSLHFSS-----VHTRDTGLYTCTGRTAGGENFEKTIKLV 141

  Fly   196 DNATIKWSFND-----LNGQPSSVD----------------NQNGVII-------------LDNV 226
            ....|:|:..|     |.|:|.::|                |.||..:             :|::
 Worm   142 VLPAIEWNDKDTVKGALLGEPITIDCGVKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSL 206

  Fly   227 DEKNAG-DYQCLADDGSRHPPHGTVHIDVQYS----PIVSTHRHNVNTEKGATAE---------- 276
            .:::|. ...|:           |:.:..:.|    |:|.  |.:||.|.....|          
 Worm   207 KKEHAELTVSCI-----------TIEMHQETSKEEFPVVD--RKDVNIEVYTLPEFETEESVQYT 258

  Fly   277 ----------LYCN--YRAKPIGRSYFIKDGKTLQLSDKYSLKDSV---HNDHNRTTLIVREVTD 326
                      :|||  :...|:....|....:.:::|||:::..:|   ...|    |.:..|.:
 Worm   259 VIDNHVRDAIIYCNVTHSFPPVRHYTFYHGDEEIKMSDKFNIFVNVGVSQGAH----LKIHNVNE 319

  Fly   327 SDLGEYLCQVENAIGSNEVKVHV--SYNPETPQFEDMTVEGNKVTLHWLVRS------------- 376
            :|||.|.|:..|....:...:|:  :..|..|:.  ..:|..:.::.|.|.|             
 Worm   320 NDLGTYKCEANNIKAKSYHTIHLREANAPAEPKV--TLIEDKRHSIIWKVESIDRDPDLPMTAVE 382

  Fly   377 --HQLLSEA----MLDYQLTGSYTWSTVQVLETHRHNNTDNIWKITHQLELSRGVWHARVKTKNT 435
              |.....|    :.|..::.:| |.:..:. ..|:...|.|::|.........||  |.:..|.
 Worm   383 IRHLRAGTAEASGVSDEDISDAY-WKSHSIF-MQRNIKDDGIYEINGLRHGHEYVW--RFRQINE 443

  Fly   436 KGW-------SHFSNDHVFEIPEDSEVDK 457
            .|:       :...:||..|:.:.:...|
 Worm   444 AGFGDSVVLRAKTLDDHDLEMMDSASDSK 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13506NP_001286718.1 IG_like 79..146 CDD:214653 14/77 (18%)
IGc2 83..146 CDD:197706 12/74 (16%)
IG_like 176..254 CDD:214653 18/112 (16%)
Ig 176..239 CDD:299845 17/97 (18%)
I-set 258..349 CDD:254352 25/115 (22%)
Ig 275..348 CDD:143165 19/97 (20%)
rig-3NP_509155.1 IG_like 48..142 CDD:214653 20/101 (20%)
Ig 267..341 CDD:319273 18/77 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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