DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13506 and negr1

DIOPT Version :9

Sequence 1:NP_001286718.1 Gene:CG13506 / 37556 FlyBaseID:FBgn0034723 Length:503 Species:Drosophila melanogaster
Sequence 2:XP_031755650.1 Gene:negr1 / 100127726 XenbaseID:XB-GENE-987949 Length:388 Species:Xenopus tropicalis


Alignment Length:328 Identity:67/328 - (20%)
Similarity:122/328 - (37%) Gaps:39/328 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 KPGDDVILNCDARNFQLSNAVVWY-KNRIIIANGQN-PISQRVQCMLNN----SILLRNVSPEDS 140
            :.|:..:|.|.........|  |. ::.||.|.|.. .:..||....::    |:.::.|...|.
 Frog    52 RQGETAMLRCFLEEGASKGA--WLNRSSIIFAGGDKWSVDPRVSIATSSKQEYSLRIQKVDVSDD 114

  Fly   141 DDYYCEI----LPQRVRQHTALRVGARLSILCDDRDITDRSQTFRQGDHHKLECRTYLPDNATIK 201
            ..|.|.:    .|:.::.|..:.|..::..:..|       .|..:|.:..|.|........:|.
 Frog   115 GPYTCSVQTEHSPRTLQVHLTV
HVSPKIYDISSD-------MTVNEGTNVSLICLATGKPEPSIS 172

  Fly   202 WSFNDLNGQPSSVDNQNGVII-LDNVDEKNAGDYQCLADDGSRHPPHGTVHIDVQYSP----IVS 261
            |.    :..||:....:|..: :..:....||||:|.|::....|....|.:.|.::|    |..
 Frog   173 WR----HISPSAKQFGSGQYLDIYGITRDQAGDYECSAEN
DVSFPDVKKVKVTVNFAPTILEITP 233

  Fly   262 THRHNVNTEKGATAELYCNYRAKPIGRSYFIKDGKTLQLSDKYSLKDSVHNDHNRTTLIVREVTD 326
            |     ....|.|..:.|...|.|.....:.|..|.| .:.:..::  :.|.:.|:.|.|..||:
 Frog   234 T-----GVSLGRTGLIRCETAAVPAPVFEWYKGEKKL-TNGQRGIR--IQNYNTRSILTVSNVTE 290

  Fly   327 SDLGEYLCQVENAIGSNEVKVHVSYNPETPQFEDMTVEGNKVTLHWLVRSH---QLLSEAMLDYQ 388
            ...|.|.|...|.:|::...:.::...|......:|........|:...|.   ...:.:...|.
 Frog   291 EHFGNYTCVAVNKLGTSNASLPLNQIIEPSTTSPVTSSAKYSVKHYARSSSDKPHYAAPSTAQYG 355

  Fly   389 LTG 391
            :||
 Frog   356 ITG 358

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG13506NP_001286718.1 IG_like 79..146 CDD:214653 15/69 (22%)
IGc2 83..146 CDD:197706 15/68 (22%)
IG_like 176..254 CDD:214653 17/78 (22%)
Ig 176..239 CDD:299845 14/63 (22%)
I-set 258..349 CDD:254352 22/94 (23%)
Ig 275..348 CDD:143165 17/72 (24%)
negr1XP_031755650.1 Ig 44..136 CDD:416386 18/85 (21%)
FR1 44..62 CDD:409353 2/9 (22%)