DRSC/TRiP Functional Genomics Resources

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Protein Alignment wrapper and Negr1

DIOPT Version :9

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:XP_038958934.1 Gene:Negr1 / 59318 RGDID:708416 Length:362 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 Ig 41..124 CDD:299845
IG_like 41..118 CDD:214653
IG_like 145..218 CDD:214653
Ig 147..219 CDD:299845
I-set 224..323 CDD:254352
IGc2 236..314 CDD:197706
FN3 339..431 CDD:238020
Negr1XP_038958934.1 FR1 38..55 CDD:409353
Ig strand A' 40..46 CDD:409353
IG_like 41..129 CDD:214653
Ig strand B 48..56 CDD:409353
CDR1 56..60 CDD:409353
FR2 61..68 CDD:409353
Ig strand C 61..67 CDD:409353
CDR2 69..79 CDD:409353
Ig strand C' 71..74 CDD:409353
Ig strand C' 76..79 CDD:409353
FR3 80..115 CDD:409353
Ig strand D 84..91 CDD:409353
Ig strand E 94..100 CDD:409353
Ig strand F 107..115 CDD:409353
CDR3 116..120 CDD:409353
Ig strand G 120..129 CDD:409353
FR4 122..129 CDD:409353
Ig strand A' 139..144 CDD:409353
IGc2 146..204 CDD:197706
Ig strand B 150..157 CDD:409353
Ig strand C 163..168 CDD:409353
Ig strand C' 170..172 CDD:409353
Ig strand E 180..186 CDD:409353
Ig strand F 193..200 CDD:409353
Ig strand G 207..215 CDD:409353
Ig_3 219..295 CDD:404760
putative Ig strand A 219..225 CDD:409353
Ig strand B 235..239 CDD:409353
Ig strand C 248..252 CDD:409353
Ig strand E 274..278 CDD:409353
Ig strand F 288..293 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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