DRSC/TRiP Functional Genomics Resources

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Protein Alignment wrapper and Negr1

DIOPT Version :10

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:XP_063138498.1 Gene:Negr1 / 59318 RGDID:708416 Length:423 Species:Rattus norvegicus


Alignment Length:264 Identity:70/264 - (26%)
Similarity:107/264 - (40%) Gaps:37/264 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 SLQVANVQSSDTGDYYCEMNSDSGHVVQQHAIEVQLAPQVLIEPSDLTEQRIGAIFEVVCEAQGV 159
            |||:.||..:|.|.|.|.:.:.......|..:.||:.|::....:|:|... |....:.|.|.|.
  Rat    96 SLQIQNVDVTDDGPYTCSVQTQHTPRTMQVHLTVQVPPKIYDISNDMTINE-GTNVTLTCLATGK 159

  Fly   160 PQPVITWRLNGNVIQPQSNT-GNRQSLILEIKSRNQAGLIECVASNGVGEPAVANVYLHVLFSPE 223
            |:|.|:||    .|.|.:.. .|.|.|.:...:|:|||..||.|.|.|..|.|..|.:.|.|:|.
  Rat   160 PEPAISWR----HISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVKKVRVVVNFAPT 220

  Fly   224 VSIPQPVVYTKLGSRAHLECIVEAAPAATVKWFHHGLPVALGAHSTTHESEL---QTNRSVDHYV 285
            :...:....|. |....:.|.....|....:|:             ..|..|   |....:.:: 
  Rat   221 IQEIKSGTVTP-GRSGLIRCEGAGVPPPAFEWY-------------KGEKRLFNGQQGIIIQNF- 270

  Fly   286 NAVRHMLVVKSVRNADMGQYECRASNQISVKSGSVEL-------TGRPMPCLFKINPGTQSSTSH 343
             :.|.:|.|.:|.....|.|.|.|:|::...:.|:.|       |..|:     .:||....|..
  Rat   271 -STRSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNQIIEPTTSSPV-----TSPGQYPHTFT 329

  Fly   344 VLVW 347
            ..||
  Rat   330 KYVW 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 IG_like 41..118 CDD:214653 9/22 (41%)
Ig strand B 52..56 CDD:409353
Ig strand C 64..68 CDD:409353
Ig strand E 94..98 CDD:409353 2/2 (100%)
Ig strand F 108..113 CDD:409353 2/4 (50%)
Ig strand G 122..125 CDD:409353 1/2 (50%)
Ig 133..219 CDD:472250 28/86 (33%)
Ig strand B 150..154 CDD:409353 0/3 (0%)
Ig strand C 163..167 CDD:409353 1/3 (33%)
Ig strand E 183..187 CDD:409353 2/3 (67%)
Ig strand F 197..202 CDD:409353 2/4 (50%)
Ig strand G 211..214 CDD:409353 1/2 (50%)
Ig_3 222..311 CDD:464046 17/91 (19%)
FN3 339..431 CDD:238020 3/9 (33%)
Negr1XP_063138498.1 None
Blue background indicates that the domain is not in the aligned region.

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