DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wrapper and robo4

DIOPT Version :9

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:XP_689255.3 Gene:robo4 / 560765 ZFINID:ZDB-GENE-020809-1 Length:1134 Species:Danio rerio


Alignment Length:519 Identity:118/519 - (22%)
Similarity:195/519 - (37%) Gaps:121/519 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 PCTLN-----TPFRYVRWHRDDVAL-VDSRHPELPPPDRIMLWPNGSLQVANVQSSDTGD----- 108
            |.||:     .|...::|.|:...| .|....:..|    ::.|:|||...:|.....|.     
Zfish    87 PATLSCRAEGNPEPTIQWLRNGQPLDTDKMDAQSQP----IVLPDGSLFFFSVVPGRKGQSHEAV 147

  Fly   109 YYCEMNSDSGHVVQQHA-IEV-QLAPQVLIEPSDLTEQRIGAIFEVVCEAQ-GVPQPVITWRLNG 170
            |.|..::..|:...::| :.: .|.....::|||: |..||.:..:.|... |.|:|.:|||.:|
Zfish   148 YACIAHNSIGNATSRNASLHIA
ALREDFRVQPSDV-EVAIGEMATINCSPPVGHPEPNVTWRKDG 211

  Fly   171 NVIQPQSN--TGNRQSLILEIKSRNQAGLIECVASNGVGEPAVANVYLHVLFSPEVSIPQPVVYT 233
            .:|...:.  |..:..||:....:|.:|:..|:|||.:|........|.||..|.:......|..
Zfish   212 ILINSSNEHYTELKGKLIIAPAQKNDSGVYSCIASNMIGVRESRAARLSV
LAKPVLLRKPEDVSV 276

  Fly   234 KLGSRAHLECIVEAAPAATVKWFHHGLPVALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKSVR 298
            :||..|...|..:..|..:::|.....|:..|.:....:..||.     |||.|           
Zfish   277 QLGESAQFFCEADGDPMPSIEWSREQGPLPNGRYLINPDHSLQI-----HYVTA----------- 325

  Fly   299 NADMGQYECRASNQISVKSGSVELT-----GRPMPCLFKINPGTQSSTSHVLVWQTESLLPIMEF 358
             .|||:|.|...|::.|...|.:|.     |..:..|.|.....:.|..:|.|..|.|.:..:.:
Zfish   326 -QDMGRYSCTVENKLGVSVASAQLLV
EDAGGTRLRDLHKELSALRVSLENVTVMSTASNMSQVMW 389

  Fly   359 KLK---------------FRQ-IPSNNVTRQVRTNWTELTIPAQATNGLIYITTYTLH----GLQ 403
            ||:               :|. :|::       ::||...:|..           :||    .|:
Zfish   390 KLQSFGSQPHYLEGFEVLYRSLLPAS-------SDWTAQRVPQP-----------SLHTHVGPLK 436

  Fly   404 PASLYEVSVLARNS--FGWSDNSK------IVRFATGGEVELPNYSTESE---LQDDFTEEDFHN 457
            ....||..|....|  :|...|::      ||..|...:|.:...:..::   |..:....|.||
Zfish   437 RGYKYEFKVRPYGSSLYGRESNTRHLRVPEIVPSAAPQDVSITMPAERNDTVHLSWEPPPHDAHN 501

  Fly   458 EITQ--------RSEVLSASMMFNSG--------------------SVNGRG-GISAFIYSLCL 492
            .|.|        ..|..|.:...:||                    :|||.| |:.:..|.|.:
Zfish   502 GIIQGYQVWCVESEEQTSFNWTVDSGTHSIEIFTLLPSRLYWVTVAAVNGAGVGVQSDPYKLLI 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 Ig 41..124 CDD:299845 18/79 (23%)
IG_like 41..118 CDD:214653 17/73 (23%)
IG_like 145..218 CDD:214653 22/75 (29%)
Ig 147..219 CDD:299845 21/74 (28%)
I-set 224..323 CDD:254352 23/98 (23%)
IGc2 236..314 CDD:197706 19/77 (25%)
FN3 339..431 CDD:238020 23/119 (19%)
robo4XP_689255.3 Ig1_Robo 70..169 CDD:143317 19/85 (22%)
I-set 71..168 CDD:254352 19/84 (23%)
I-set 175..261 CDD:254352 26/86 (30%)
Ig2_Robo 177..261 CDD:143201 26/84 (31%)
I-set 265..350 CDD:254352 25/101 (25%)
Ig 282..350 CDD:299845 21/84 (25%)
FN3 373..448 CDD:214495 17/92 (18%)
FN3 472..560 CDD:238020 16/87 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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