DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wrapper and Dscam1

DIOPT Version :9

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:517 Identity:107/517 - (20%)
Similarity:186/517 - (35%) Gaps:153/517 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 DTVQLPCTL-NTPFRYVRWHRDDVALVDSRHPELPPPDRIMLWPNGSLQVANVQ-SSDTGDYYCE 112
            :|:.:.|.: ..|...:.|.||:.||..:|..:        ::|||:|.:.||: :||...|.|.
  Fly   545 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQK--------VFPNGTLIIENVERNSDQATYTCV 601

  Fly   113 MNSDSGHVVQ-QHAIEVQLAPQVL-IEPSDLTEQRIGAIFEVVCEAQGVPQPV-ITWRLNGNV-- 172
            ..:..|:..: ...::|.:.||:: ....||.  .:|...::.|:.|...:|: :.|....:.  
  Fly   602 AKNQEGYSARGSLEVQV
MVLPQIVPFAYEDLI--NMGDSIDLFCQIQKGDRPIKVHWSFERSAGD 664

  Fly   173 -----IQPQSNTG--NRQSLILEIKSRNQA--GLIECVASNGVGEPAVANVYLHVLFSPE-VSIP 227
                 :|||..|.  :.::.::.|.|.:.|  |...|:|||..| ....:|.|.|...|. :..|
  Fly   665 YGFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAG-TTTYSV
DLTVNVPPRWILEP 728

  Fly   228 QPVVYTKLGSRAHLECIVEAAPAATVKWFHHGLPVALGAHSTTHESELQTNRSVDHYVNAVRHML 292
            ....:.: ||.|.:||..:..|...|.|     ..|:|    ....|.:..:..|: :......|
  Fly   729 TDKAFAQ-GSDAKVECKADGFPKPQVTW-----KKAVG----DTPGEYKDLKKSDN-IRVEEGTL 782

  Fly   293 VVKSVRNADMGQYECRASN----------QISVKSG--------------------SVELTG-RP 326
            .|.:::..:.|.|.|.|.|          .|||::.                    ..|..| :|
  Fly   783 HVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKP 847

  Fly   327 MPCLFKIN--------------------PGTQSSTSHVLVWQTESLL------------------ 353
            :..|:.:|                    .|..||.|.....:::|.|                  
  Fly   848 IGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINM 912

  Fly   354 -----PIMEFKLKFRQIPSNNVT--------------------RQVRTNWTEL---TIPAQATNG 390
                 |.|.:.||.......:|.                    ::.|.:|:|:   .:|...|..
  Fly   913 IVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASWSEIDRVIVPGHTTEA 977

  Fly   391 LIYITTYTLHGLQPASLYEVSVLARNSFGWSDNSKIVRFATGGE----------VELPNYST 442
            .:       ..|.||:.|.:.::|.|:.|.|.:|:.|...|..|          ||..|.:|
  Fly   978 QV-------QKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTT 1032

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 Ig 41..124 CDD:299845 20/76 (26%)
IG_like 41..118 CDD:214653 19/69 (28%)
IG_like 145..218 CDD:214653 20/84 (24%)
Ig 147..219 CDD:299845 20/83 (24%)
I-set 224..323 CDD:254352 24/128 (19%)
IGc2 236..314 CDD:197706 19/87 (22%)
FN3 339..431 CDD:238020 25/137 (18%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352 20/80 (25%)
IGc2 544..607 CDD:197706 19/69 (28%)
Ig 641..714 CDD:143165 17/73 (23%)
IGc2 735..804 CDD:197706 19/79 (24%)
I-set 819..914 CDD:254352 11/94 (12%)
Ig 833..921 CDD:299845 12/87 (14%)
FN3 918..1011 CDD:238020 20/99 (20%)
FN3 1018..1116 CDD:238020 4/15 (27%)
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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