DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wrapper and Dscaml1

DIOPT Version :9

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:530 Identity:106/530 - (20%)
Similarity:178/530 - (33%) Gaps:192/530 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 PTTVKTYEN-------DTVQLPC-TLNTPFRYVRWHRDDVALVDSRHPELPPPDRIMLWPNGSLQ 97
            |.:::...|       ||: :.| .:..|:..::|::|.:.|.|:.        |.:::.||:|:
  Rat   563 PPSIRAMRNITAVAGRDTL-INCRVIGYPYYSIKWYKDALLLPDNH--------RQVVFENGTLK 618

  Fly    98 VANVQSS-DTGDYYCEM-------NSDSGHVVQQHAIEVQLAPQVLIEPSDLTEQRIGAIFEVVC 154
            :.:||.. |.|:|.|.:       .|.|.||.      |::.|  ||:|.:.....||.:..:.|
  Rat   619 LTDVQKGMDEGEYLCSVLIQPQLSISQSVHVA------VKVPP--LIQPFEFPPASIGQLLYIPC 675

  Fly   155 EAQGVPQPV-ITWRLNGNVIQPQSNTGNR-----QSLILEIKSRNQAGLIECVASNGVGEPAVAN 213
            .......|: ||||.:|.||...|.....     .||.:...|....|...|:|||     |.|.
  Rat   676 VVSSGDMPIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVSLKHNGNYTCIASN-----AAAT 735

  Fly   214 V----YLHVLFSPEVSIP---QPVVYTKLGSRAHLECIVEAAPAATVKWFH----------HGLP 261
            |    .|.|...|...:.   |..:|.|.|.   |.|.|:..|...|.|.|          |.:|
  Rat   736 VSRERQLIVRVPPRFVVQPNNQDGIYGKAGV---LNCSVDGYPPPKVMWKHAKGSGNPQQYHPVP 797

  Fly   262 VALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKSVRNADMGQYECRASNQISVKSGSVELTGRP 326
            :       |...::..|.|:     .:||:|      ..|:|.|.|:|||.:.............
  Rat   798 L-------TGRIQILPNSSL-----LIRHVL------EEDIGYYLCQASNGVGTDISKAMFLTVK 844

  Fly   327 MPCLFKINPGT---------------QSSTSHVLVWQT---------------------ESLLPI 355
            :|.:...:|.|               :.....::.|:.                     :.::..
  Rat   845 IPAMITSHPNTTIAIKGHAKELNCTARGERPIIIRWEKGDTVIDPDRVMRYAIATKDNGDEVVST 909

  Fly   356 MEFK-------------------------------------LKFRQIPSNNVTRQVRTNWTELTI 383
            ::.|                                     |:.|::.:    |.:...||    
  Rat   910 LKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPELEIREVKA----RSMNLRWT---- 966

  Fly   384 PAQATNGLIYITTYTLH---------------------------GLQPASLYEVSVLARNSFGWS 421
              |..:|...||.:.:.                           .|.|||:|.:.:.:.|..|.|
  Rat   967 --QRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISPTINQANIVDLHPASVYSIRMYSFNKIGRS 1029

  Fly   422 DNSKIVRFAT 431
            :.||.:..:|
  Rat  1030 EPSKELTIST 1039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 Ig 41..124 CDD:299845 24/98 (24%)
IG_like 41..118 CDD:214653 21/92 (23%)
IG_like 145..218 CDD:214653 24/82 (29%)
Ig 147..219 CDD:299845 23/81 (28%)
I-set 224..323 CDD:254352 26/111 (23%)
IGc2 236..314 CDD:197706 23/87 (26%)
FN3 339..431 CDD:238020 21/176 (12%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652
IGc2 101..168 CDD:197706
Ig 183..276 CDD:299845
IG_like 195..276 CDD:214653
I-set 291..369 CDD:254352
IGc2 298..359 CDD:197706
IGc2 386..447 CDD:197706
I-set 466..560 CDD:254352
Ig 466..556 CDD:299845
IGc2 577..635 CDD:197706 18/66 (27%)
IG_like 665..744 CDD:214653 24/83 (29%)
Ig 673..739 CDD:143165 21/70 (30%)
I-set 748..843 CDD:254352 27/115 (23%)
Ig7_DSCAM 765..843 CDD:143211 23/98 (23%)
I-set 849..942 CDD:254352 4/92 (4%)
Ig 861..949 CDD:299845 2/87 (2%)
FN3 945..1039 CDD:238020 19/103 (18%)
FN3 1046..1143 CDD:238020
fn3 1151..1237 CDD:278470
FN3 1249..1340 CDD:238020
IGc2 1364..1428 CDD:197706
FN3 1442..1532 CDD:238020
FN3 1546..1618 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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