DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wrapper and Lrit3

DIOPT Version :9

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_001274153.1 Gene:Lrit3 / 242235 MGIID:2685267 Length:681 Species:Mus musculus


Alignment Length:563 Identity:123/563 - (21%)
Similarity:191/563 - (33%) Gaps:187/563 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 DLENSQKFKSIPTTVKTYENDTVQLPCTLN-----TPFRYVRWHRDDVALVDSRHPELPPPDRIM 89
            ||.|: :..|:|.....|..:...|..:.|     .|.....|  ..:|:..||.|:. ||.||:
Mouse   135 DLHNN-RIASVPNEAVRYLRNLTCLDLSSNRLTTLPPDFLDSW--SHLAVTPSRSPDF-PPRRII 195

  Fly    90 LWPNGSLQVANVQSSDTGDYYC--------EMNSDSGHVV--------------------QQHAI 126
            |    .||        ...::|        |::..:.|.|                    |:..:
Mouse   196 L----GLQ--------DNPWFCDCHISKVIELSKVTDHAVVLLDPLMVCSEPERFQGILFQRVEL 248

  Fly   127 EVQLAPQVLIEPSDLTEQRIGAIFEVVCEAQGVPQPVITW------RLNGNVIQPQSNTGNRQSL 185
            |..|.|.|::..:.:| ..:|:...:.|:|:|.|.|.:||      .:|..|||.....|.|.|:
Mouse   249 EKCLKPSVMMSATKIT-SALGSNVLLRCDAKGHPTPQLTWTRSDGSTVNYTVIQESPGEGIRWSI 312

  Fly   186 I-LEIKSRNQAGLIECVASN--GVGEPAVANVY----LHVLFSPEVS----------IPQPVVYT 233
            | |...|...||...|.|.|  |:.| ||..|.    :....||:.|          .|||    
Mouse   313 ISLTSISHKDAGDYRCKAKNLAGISE-AVVTVTVVGGVTTTLSPDSSERSPGEPPEQHPQP---- 372

  Fly   234 KLG-----SRAHLECIVEAAPA--------ATVKWF--HHGLPVALGAHSTTHESELQTNRSVDH 283
            .||     |::.|...:.:||:        .|..|.  ...||....|.|.|             
Mouse   373 GLGGSTPPSKSWLSPGLTSAPSYPTPSAALYTSTWSPPPSSLPPIFSAASAT------------- 424

  Fly   284 YVNAVRHMLVVKSVRNADMGQYECRASNQISV------KSGSVELTGRPMPCLFKINPGTQSSTS 342
                       .||:.:..|: ..|.|:|..:      .:..:|..||..|      |.:.|...
Mouse   425 -----------TSVQTSISGR-TARTSHQPPLLHPGGKSNAKIEKNGRKFP------PLSASKKE 471

  Fly   343 HVLVWQTESLLPIMEFKLKFRQIPSNNVTRQ----VRTNWTELTIPAQATNGLIYITTY------ 397
            .:.:  .:...| ||..:..:.:   .|.|:    |...|...:...:::..::| :.|      
Mouse   472 ELAL--LDQAAP-METNVTIKDL---RVARETGVSVTLMWNSSSSTQESSVTVLY-SKYGEKDLL 529

  Fly   398 ------------TLHGLQPASLYEVSVLARNSFGWSDNSKIVRFAT------GGEVELPNYSTES 444
                        |::||:|.|.|...|..:......|  ..:.|:|      |.:..|....|.:
Mouse   530 LVNADDYGKNQATINGLEPGSQYVACVCPKGVGPRED--LCITFSTNRVEGRGSQWSLLLVVTST 592

  Fly   445 -----------------ELQ---DDFTEEDFHNEITQRSEVLS 467
                             :||   |.|.|||...|...:.|.||
Mouse   593 ACVIVVPLICFLLYKVCKLQCTSDPFWEEDLSKETYIQFETLS 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 Ig 41..124 CDD:299845 22/115 (19%)
IG_like 41..118 CDD:214653 19/89 (21%)
IG_like 145..218 CDD:214653 28/85 (33%)
Ig 147..219 CDD:299845 28/84 (33%)
I-set 224..323 CDD:254352 24/129 (19%)
IGc2 236..314 CDD:197706 18/92 (20%)
FN3 339..431 CDD:238020 19/113 (17%)
Lrit3NP_001274153.1 LRR 1. /evidence=ECO:0000255 56..79
LRR_8 61..117 CDD:290566
LRR 2. /evidence=ECO:0000255 80..103
leucine-rich repeat 83..106 CDD:275378
LRR 3. /evidence=ECO:0000255 104..128
LRR_8 105..165 CDD:290566 8/30 (27%)
LRR_4 106..146 CDD:289563 4/11 (36%)
leucine-rich repeat 107..130 CDD:275378
LRR_4 129..170 CDD:289563 8/35 (23%)
LRR 4. /evidence=ECO:0000255 129..151 5/16 (31%)
leucine-rich repeat 131..154 CDD:275378 6/19 (32%)
LRR 5. /evidence=ECO:0000255 152..175 3/22 (14%)
leucine-rich repeat 155..168 CDD:275378 2/12 (17%)
Ig 254..335 CDD:299845 26/81 (32%)
IG_like 263..339 CDD:214653 26/77 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 350..391 10/44 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 425..464 10/45 (22%)
FN3 489..563 CDD:238020 13/77 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.