DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wrapper and Lrit1

DIOPT Version :9

Sequence 1:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_666357.2 Gene:Lrit1 / 239037 MGIID:2385320 Length:624 Species:Mus musculus


Alignment Length:412 Identity:92/412 - (22%)
Similarity:148/412 - (35%) Gaps:109/412 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 QLAPQV--LIEPSDLTEQRIGAIFEVVCEAQGVPQPVITWR------LNGNVIQPQSNTGNRQSL 185
            :|.|.|  :|.|       :|:...:.|.|.|:|.|.::||      |||.|.|..|:.|:..:|
Mouse   256 ELRPGVTSIISP-------LGSTVLLRCGATGIPGPEMSWRRANGRPLNGTVHQEVSSDGSSWTL 313

  Fly   186 I-LEIKSRNQAGLIECVASNGVGEPAVANVYLHVLFSPEVS-----IPQPVVYTKLGSRA----- 239
            : |.:.|...:|...|.|.|.:|  |...:...::..|:.|     || .|::.:.|..|     
Mouse   314 LDLPVVSLFDSGDYICQAKNFLG--ASETLISLIVTEPQTSTGYSGIP-GVLWARTGEGAEAAAY 375

  Fly   240 -------HLECIVEAAPAAT------------VKWFHHGLPVALGAHSTTHESELQTNRSV---- 281
                   |:..:.|....||            ::.|...:|.......:.|: |.|..||:    
Mouse   376 NNKLVARHVPHMPEHVALATKPSMPSIKEELALQNFQMDVPGEFSREPSEHQ-EAQMVRSLKVVG 439

  Fly   282 DHYVNAVRHMLVVK----------SVRNADMGQYECRASNQISVKSGSVELTGRPMPCLFKINPG 336
            |.|.:.   .||.|          ||..|..|..:.|   :::|:.|...:|          ..|
Mouse   440 DTYHSV---SLVWKAPQAGNTTAFSVLYAVFGHRDMR---RMTVEPGKTSVT----------IEG 488

  Fly   337 TQSSTSHVLVWQTESLLPIMEFKLKFRQIPSNNVTRQVRTNWTELTIPAQATNGLI---YITTYT 398
            ....|.:|.......|:|..|..:.|.               |:..:.|:.|..||   .|:...
Mouse   489 LAPKTKYVACVCVRGLVPTKEQCVIFS---------------TDEVVDAEGTQRLINMVVISVAA 538

  Fly   399 LHGLQPASLYEVSVLARNSFGWSDNSKIVRFATGGEVELPNYSTESEL---QDDFTEEDFHNEIT 460
            :..|.|..|.....|.|         :..:..|||..|........|.   .:|.:|....:.::
Mouse   539 IIALPPTLLVCCGALRR---------RCHKCRTGGSAEASGAYVNLERLGHSEDSSEVLSRSSLS 594

  Fly   461 QRSEVLSASMMFNSGSVNGRGG 482
            :...:|||....:|..:..|||
Mouse   595 EGDRLLSARSSLDSQVLGVRGG 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wrapperNP_477404.1 Ig 41..124 CDD:299845
IG_like 41..118 CDD:214653
IG_like 145..218 CDD:214653 24/79 (30%)
Ig 147..219 CDD:299845 24/78 (31%)
I-set 224..323 CDD:254352 29/141 (21%)
IGc2 236..314 CDD:197706 23/115 (20%)
FN3 339..431 CDD:238020 17/94 (18%)
Lrit1NP_666357.2 LRRNT 23..61 CDD:214470
LRR 1 60..81
LRR_8 63..143 CDD:290566
leucine-rich repeat 64..84 CDD:275378
LRR 2 84..105
leucine-rich repeat 85..132 CDD:275378
LRR 3 108..129
LRR_8 131..>176 CDD:290566
LRR_4 131..172 CDD:289563
LRR 4 132..153
leucine-rich repeat 133..156 CDD:275378
LRR 5 156..177
leucine-rich repeat 157..180 CDD:275378
leucine-rich repeat 181..205 CDD:275378
TPKR_C2 201..>241 CDD:301599
Ig 258..346 CDD:299845 28/96 (29%)
IG_like 268..346 CDD:214653 24/79 (30%)
FN3 432..502 CDD:214495 18/85 (21%)
LRR 6 526..549 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.