DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtf1 and TZP

DIOPT Version :9

Sequence 1:NP_001286717.1 Gene:Rtf1 / 37554 FlyBaseID:FBgn0034722 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_001330181.1 Gene:TZP / 834383 AraportID:AT5G43630 Length:831 Species:Arabidopsis thaliana


Alignment Length:631 Identity:135/631 - (21%)
Similarity:226/631 - (35%) Gaps:164/631 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KRRTQSLIDSN----SSDSDSESETNLES----DLMSLAKKR-----------KKPQTAAK---- 44
            |.:.::|.|.|    ..|.|.||..::||    .|:|..|||           |:.:|..:    
plant   228 KGKEKALSDENFGGDGEDEDEESFGSVESCNSAGLLSRGKKRPGFEEQLIFGSKRLKTLNQECLG 292

  Fly    45 SSSRSDSDS---DWANNKAGAPSSKKKKRQKP-------SRDSSSSESNWDDDSQD-------ER 92
            |:|:...||   :|.:|.........::...|       |..:...:.|...|.|.       |.
plant   293 STSKLKQDSSFMNWISNMTKGIWKGNEEDNSPFVALTTTSNANGHGQVNAIVDQQQLSPCCVKEN 357

  Fly    93 QPARQSPAQT--QQEHKPPEQAS-----------QPAQLSE----QEEGEVSDSDSDKSKSN--- 137
            ...|.:..|:  |..:.|.:|:.           ..|.|.|    .|..::|..|...|..|   
plant   358 SGCRNTGFQSFFQSIYCPKKQSQDVVDMDFPNDVNAAPLQELPWIPEHCDISKGDDLSSSGNEIG 422

  Fly   138 -----SSSSGS---DSSSSSSSSDSEFDDGFDDDLMGDDEDRRRLNGLSEKERETEIYKRIEQRE 194
                 :.|||.   :.:|.:.||:::.:         |.|....|..||:.:...|         
plant   423 PVAEPNISSGKVVFNQTSKTQSSENKRE---------DKEPNISLMSLSKSKPNEE--------- 469

  Fly   195 IMRTRWEIERKLKLARRGEKNQEKS------KNKGERAKKKKEKREKKARKAREAQAPLPTQAST 253
             .:|..|.:.|:........:..||      .:||...:||..:..|:|..:  |.....|:.|.
plant   470 -PKTCGEADGKVSPCLTNRNSGLKSLWISRFSSKGSFPQKKASETAKEANAS--ASDAAKTRDSR 531

  Fly   254 STLLDVEPKPSNEVR-SASPLSTPALNRDAASTSAAVASIMPDDAASSAGVSDYFDHKERSKERK 317
            ..|.|     .|.:| |.|.:..|    |...|...:.|.|..:  ||..::..|   .|..|..
plant   532 KMLAD-----KNVIRPSISSVDGP----DKPDTVLPIVSSMRIE--SSEAMASLF---ARRLEAM 582

  Fly   318 KNVE-----ANKTDDKRSNAMALLKAKREGKAKRE-----EEEAKRMAEK-DRDDDKEELDSVSG 371
            |::.     |...::::.:.:.....|: |...|:     :.|.:.:.:. ...:.:||..|:  
plant   583 KSIMPSGSLAENAEEEQRDLICFYCGKK-GHCLRDCLEVTDTELRDLVQNISVRNGREEASSL-- 644

  Fly   372 CKSAVKLKASEIYSDDSGSSDWDEEEKPA---GKRSRSNSSKASSESEDEEKAP-------QRPV 426
            |....:|            |.|......|   |..:...:.|.:..|....|.|       .|.|
plant   645 CIRCFQL------------SHWAATCPNAPLYGSGAEGRAMKNALASTSGMKLPISGFTDVPRAV 697

  Fly   427 FITTREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRI-------SIGNNGQKPVYRVAEIVGVV 484
            |    :.:..|||||..:.:::|.....|.:...|:|:       .:|..|    |.||.|.|..
plant   698 F----DAVQVLRLSRTDVLKWINTKKSVSGLEGFFLRLRLGKWEEGLGGTG----YYVARIDGDT 754

  Fly   485 ETGKIYSLGTTRTNRGLRLKHGTQERVFRLEFISNQEFTENEFNKW 530
            | |:.....:.::...:::|..|  .:...:|||||:|.|.|...|
plant   755 E-GQSSRRHSEKSLISVKVKGVT--CLVESQFISNQDFLEEELKAW 797

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtf1NP_001286717.1 Plus3 428..535 CDD:197843 29/110 (26%)
TZPNP_001330181.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13115
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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