DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rtf1 and rtfo-1

DIOPT Version :9

Sequence 1:NP_001286717.1 Gene:Rtf1 / 37554 FlyBaseID:FBgn0034722 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_505473.1 Gene:rtfo-1 / 179345 WormBaseID:WBGene00009103 Length:613 Species:Caenorhabditis elegans


Alignment Length:798 Identity:220/798 - (27%)
Similarity:357/798 - (44%) Gaps:241/798 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SNSSDSDSESETNLESDLMSLAKKRKKPQTAAKSSSRSDSDSDWANNKAGAPSSKKKKRQKPSRD 76
            |:|..:.|:.||           ||:.|.|     |.|||||| |..|.|.|.         |.|
 Worm     2 SSSESASSDEET-----------KRRAPAT-----SDSDSDSD-AGPKPGKPL---------STD 40

  Fly    77 SSSSESNWDDDSQDERQPARQSPAQTQQEHKPPEQASQPAQLSEQEEGEVSDSDSDKSKSNSSSS 141
            ||:|:|   |..:.:.:||::. ..|:::.:                                  
 Worm    41 SSASDS---DAEKPQAKPAKKK-TLTKRKRR---------------------------------- 67

  Fly   142 GSDSSSSSSSSDSEFDDGFDDDLMGDDEDRRRLNGLSEKERETEIYKRIEQREIMRTRWEIERKL 206
                  ::.|||   ||..||||..|.||:.|...|:|.|:|.||::|:|.||....|.||.:  
 Worm    68 ------ATGSSD---DDQVDDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEIAQ-- 121

  Fly   207 KLARRGEKNQEKSKNKGERAKKKKEKREKKARKAREAQAPLPTQASTSTLLDVEPKPSNEVRSAS 271
            :||::.:|:.||.        .|.|||.|......:|.:|                         
 Worm   122 QLAKKAKKSSEKG--------VKTEKRRKMNSGGSDAGSP------------------------- 153

  Fly   272 PLSTPALNRDAASTSAAVASIMPDDAASSAGVSDYFDHKERSKERKKNVEANKTDDKRSNAMALL 336
                   .|.|:|.|         |:...|..     |:.....||         .|..|||..|
 Worm   154 -------KRKASSDS---------DSEMDAAF-----HRPSDINRK---------HKEKNAMDAL 188

  Fly   337 KAKREGKAKREEEEAKRMAEKDRDDDKEELDSVSGCKSAVKLKASEIYSDDSGSSDWDEEEKPAG 401
            |.||           |.:.:|:..::...:|:|.|.              :||||.         
 Worm   189 KNKR-----------KEIEKKNAKNEALSIDAVFGA--------------NSGSSS--------- 219

  Fly   402 KRSRSNSSKASSESEDEEKAPQRPVFITTRE-----------DLNKLRLSRYKMERFVNLPIFES 455
              |.|:|..:.|.|...|.:|:|   ::.::           :|.:.||||:|:...::.|.|:|
 Worm   220 --SSSSSESSRSSSSSRESSPER---VSEKDKIVKKDVDGLSELRRARLSRHKLSLMIHAPFFDS 279

  Fly   456 TVLNCFVRISIGN-NGQKPVYRVAEIVGVVETGKIYSLGTTRTNRGLRLKHGTQERVFRLEFISN 519
            ||:.|:||:..|. :|....||:.:||||.|:.|:|.|...:||:.::.::|..||.||::|:||
 Worm   280 TVVGCYVRLGQGQMSGSGSKYRIWKIVGVEESNKVYELEGKKTNKIIKCQNGGSERPFRMQFVSN 344

  Fly   520 QEFTENEFNKWNEVCQQSHVQMPTIDLIAIKQNDIKKALNYEFKDEDVDKIVEEKNRFRNRPTNY 584
            .:|.:.||::|...|:: |..:||:|::..|:.||:||:|:::.|::||.:::||::::..|.|:
 Worm   345 ADFEQIEFDEWLLACKR-HGNLPTVDIMDKKKQDIEKAINHKYSDKEVDLMIKEKSKYQTVPRNF 408

  Fly   585 AMKKTCLMKERDAAMLRGDYDIAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRKKNVED 649
            ||.|....|:::.|..|||...|:.:..:|||:|.:|.||:|.||.:::.|::||.|||.|    
 Worm   409 AMTKANWSKQKELAQQRGDIREAEQIQTKIDEIERQADELEKERSKSISAIAFINHRNRSK---- 469

  Fly   650 AEKAILEEARANKGLKI-----SDPFTRRITQPRMGFKGAK--------------------KDED 689
                 :::...:..|||     .|||||:....|: ..|:|                    ||:.
 Worm   470 -----IKDQVLSGQLKIEENSQDDPFTRKKGGMRV-VSGSKSRLDGTLSASSSTTNLSDGGKDKS 528

  Fly   690 DMQLAPLPPPPPGKKRPNEAGTSSASVRSTDSKDYSLYSLHDFDIDLDVPLPVNTNSVPKPASKP 754
            .....|..|||           |:...:.||     :.||||||:|:|:....:.::.....:|.
 Worm   529 SSLAKPTQPPP-----------STQIKKKTD-----ISSLHDFDLDIDLGKLKDFSTPESSGNKR 577

  Fly   755 AETVSKRSLNLEDYKKKR 772
            ....|.:.::|.||:.:|
 Worm   578 PSISSSKGVSLSDYRMRR 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtf1NP_001286717.1 Plus3 428..535 CDD:197843 40/118 (34%)
rtfo-1NP_505473.1 COG5296 82..503 CDD:227615 156/535 (29%)
Plus3 252..360 CDD:197843 40/107 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167455
Domainoid 1 1.000 120 1.000 Domainoid score I3575
eggNOG 1 0.900 - - E1_COG5296
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 246 1.000 Inparanoid score I2043
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55546
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003630
OrthoInspector 1 1.000 - - oto17975
orthoMCL 1 0.900 - - OOG6_103917
Panther 1 1.100 - - LDO PTHR13115
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1264
SonicParanoid 1 1.000 - - X3500
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.