DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtf1 and rtf1

DIOPT Version :9

Sequence 1:NP_001286717.1 Gene:Rtf1 / 37554 FlyBaseID:FBgn0034722 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_001077046.1 Gene:rtf1 / 100000471 ZFINID:ZDB-GENE-030131-6778 Length:681 Species:Danio rerio


Alignment Length:823 Identity:313/823 - (38%)
Similarity:449/823 - (54%) Gaps:197/823 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KRRTQSLIDSNSSDSDSESETNLESDLMSLAKKRK-----------KPQTAAKSSSRSDSDSDWA 56
            ||:.:.:|||:|  .||.|:.||:.:|:||||:::           || .|:..|..||||.:|.
Zfish     6 KRKGRVVIDSDS--EDSASDDNLDQELLSLAKRKRVDSDEQEEPVSKP-AASTDSETSDSDDEWT 67

  Fly    57 -----NNKAGAPSSKKKK----RQKPSRDSSSSESNWDDDSQDERQPARQSPAQTQQEHKPPEQA 112
                 ..|.|.||...:|    :::..:.:||..||.|...:.                      
Zfish    68 VGGTKTKKKGKPSKGPEKKNTVKKRKGKAASSGSSNGDSSGES---------------------- 110

  Fly   113 SQPAQLSEQEEGEVSDSDSDKSKSNSSSSGSDSSSSSSSSDSEFDDGFDDDLMGDDEDRRRLNGL 177
                  |..|||||||||     ||||||.||  |.|||.|..|.||:.||||||:|||.||..:
Zfish   111 ------SAPEEGEVSDSD-----SNSSSSSSD--SDSSSEDEVFRDGYGDDLMGDEEDRARLEQM 162

  Fly   178 SEKERETEIYKRIEQREIMRTRWEIERKLKLARRGEKNQEKSKNKGERAKKKKEKREKKARKARE 242
            :|||||.|::.|||:||:::.|:||::|||.|::.||.::|        ||::|::||:    ::
Zfish   163 TEKEREQELFNRIEKREVLKRRFEIKQKLKTAKKKEKEEKK--------KKQEEEQEKR----KQ 215

  Fly   243 AQAPLPTQASTSTLLDVEPKPSNEVRSASPLSTPALNRDAASTSAAVASIMPDDAASSAGVSDYF 307
            :|.| .||...|                                                     
Zfish   216 SQVP-DTQVVMS----------------------------------------------------- 226

  Fly   308 DHKERSKERKKNVEANKTDDKRSNAMALLKAKREGKAKREEEEAKRMAEKDRDDDKEELDSVSGC 372
                .:|||:  ::.::..||:|.||..|||:||   ||:...|:.:|::.              
Zfish   227 ----HNKERR--IKRDEKLDKKSQAMEELKAERE---KRKNRTAELLAKRQ-------------- 268

  Fly   373 KSAVKLKASEIYSDDSGSSDWDEEEKPAGKRSRSNSSKASSESEDEEKAPQRPVFITTREDLNKL 437
                .||.||:||||....: |:::|.:.|..||:.|.:..|.|::|:||.:...::..::||::
Zfish   269 ----PLKTSEVYSDDEEEEE-DDDDKSSVKSDRSSRSSSFDEEEEKEEAPPKSQPVSLPDELNRI 328

  Fly   438 RLSRYKMERFVNLPIFESTVLNCFVRISIGNNGQKPVYRVAEIVGVVETGKIYSLGTTRTNRGLR 502
            ||||:|:||:.::|.|..||..|||||.|||:..|||||||||:.||||.|||.||:||||:||:
Zfish   329 RLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSNKPVYRVAEIIDVVETAKIYQLGSTRTNKGLQ 393

  Fly   503 LKHGTQERVFRLEFISNQEFTENEFNKWNEVCQQSHVQMPTIDLIAIKQNDIKKALNYEFKDEDV 567
            |:||...|||||||:|||||||:||.||.|....:.:|:||:|.|..|:..||:|:||:|.|:|:
Zfish   394 LRHGNDTRVFRLEFVSNQEFTESEFMKWKEAMMIAGMQLPTLDEINKKEQSIKEAVNYKFNDKDI 458

  Fly   568 DKIVEEKNRFRNRPTNYAMKKTCLMKERDAAMLRGDYDIAQDLGQQIDELENRASELDKRRSHTL 632
            :.||:||:|||..|.|||||||.|:||:..|...||.|.|:.|..|::|||.||..||::|:..:
Zfish   459 EDIVKEKDRFRKAPPNYAMKKTQLLKEKAMAEESGDGDKAKTLQDQLNELEERAEALDRQRTKNI 523

  Fly   633 NLISYINDRNRKKNVEDAEKAILEEARANKGLKISDPFTRRITQPRM------------------ 679
            :.|||||.|||..|:.::|||::.|.:.:|..:: ||||||..:|.|                  
Zfish   524 SAISYINQRNRSWNIVESEKALVAEGQNSKNQQM-DPFTRRQCKPTMVSNARDPSVHAAILAHLN 587

  Fly   680 ---GFKGAKKDEDDMQLAPLPPPPPGKKRPNEAGTSSASV-RSTDSKDYSLYSLHDFD--IDLDV 738
               | .|:...:|:.|.|        .|:..:|......| :.|......|:.:||||  |||.|
Zfish   588 QKYG-SGSGAGQDNSQQA--------NKQLGQASQKDKDVTKPTSDLSEDLFKVHDFDVKIDLQV 643

  Fly   739 P------LPVNTNSVPKPASKPAETVSKRSLNLEDYKKKRGLI 775
            |      |.|::|::|.....|     :||||||||||:||||
Zfish   644 PNAEAKSLSVSSNALPVKDGAP-----RRSLNLEDYKKRRGLI 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtf1NP_001286717.1 Plus3 428..535 CDD:197843 67/106 (63%)
rtf1NP_001077046.1 COG5296 152..589 CDD:227615 209/531 (39%)
Plus-3 325..423 CDD:281165 66/97 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 167 1.000 Domainoid score I3820
eggNOG 1 0.900 - - E1_COG5296
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H133868
Inparanoid 1 1.050 424 1.000 Inparanoid score I1748
OMA 1 1.010 - - QHG55546
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003630
OrthoInspector 1 1.000 - - oto41484
orthoMCL 1 0.900 - - OOG6_103917
Panther 1 1.100 - - LDO PTHR13115
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1264
SonicParanoid 1 1.000 - - X3500
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.900

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