DRSC/TRiP Functional Genomics Resources

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Protein Alignment Liprin-gamma and Liprin-alpha

DIOPT Version :9

Sequence 1:NP_001097414.1 Gene:Liprin-gamma / 37552 FlyBaseID:FBgn0034720 Length:1152 Species:Drosophila melanogaster
Sequence 2:NP_001260155.1 Gene:Liprin-alpha / 249072 FlyBaseID:FBgn0046704 Length:1214 Species:Drosophila melanogaster


Alignment Length:1150 Identity:272/1150 - (23%)
Similarity:432/1150 - (37%) Gaps:314/1150 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 HKLGESKIAKSLDTSVSTG--LKEKAASVNNNKPIRPLLSLDSSVT-------ASTSSGATGSGG 88
            ||..:.|:.:.|..|:...  ::|:.:|....     |....:.|.       :...|.||.:||
  Fly   166 HKALDEKVRERLRLSIEKNNMMEEELSSAKEE-----LAQYKAGVVPAGVGSGSGAGSAATTAGG 225

  Fly    89 GGAPAKPSPLVLASKRDLTPSNESSSSPSSSNGSN----------------QTLTPPMTADNQPL 137
            |||.              ....|..:....|.|.|                ||:....|::....
  Fly   226 GGAE--------------NGLKEKMAGVGGSGGVNGEANELNDYAAKTHELQTIIEKQTSELSQW 276

  Fly   138 QQ----------QLQHHQHRSPAYPGKPAEAAG--------GVPQQQQQQQQLPNGIGSSHCNSN 184
            |:          :|:.:..|......|..:...        .|.|::.|::::.. :...:.|:.
  Fly   277 QRRVSDLNNKISELEENMSRVQKEHCKAQDQCAKLQRDLRENVAQKEDQEERITT-LEKRYLNAQ 340

  Fly   185 SNGISSTCNSGTAMIHANNSNL--------------------------IAAGHLAQAA----GPA 219
            ....|         :|..|..|                          ::...|||.|    ...
  Fly   341 RESTS---------LHDLNEKLEQELRHKEAQLKLHEEKIGAIEEKLELSEQKLAQHAKLQPDME 396

  Fly   220 HNAPSSGSALNAVDKRNANLSEPDQDLPPNL----NVNLSPNPSLALGAPHSPTSAASAALLLLE 280
            ....:...||....:|:.:..:..:.|..||    |..:..|..|.:...|:...:::...||.|
  Fly   397 EQLKARMEALTKAQERHGSAEDRIRGLETNLDEKTNEVVRLNQRLKMNEEHNLRLSSTVDKLLSE 461

  Fly   281 SCDGNRNDESRFH---HLHSAPRPEATMKLREENDRLNAELLRLRRLLELSTDGAVGGVDTAPEM 342
            |     |:..:.|   .:|:.          :|.:.|..||.:.|::.|              |:
  Fly   462 S-----NERLQVHLKERMHAL----------DEKNALTQELEKARKVAE--------------EL 497

  Fly   343 EAVASGEGSAAKERIERLESELRSVKNQLLTMRL------------------------------- 376
            .    .|.|...:.:.:...|:.:.|.|||...:                               
  Fly   498 H----HEKSEIMKELSKTRLEIENFKRQLLQQEIAYNIQQTEALTRSLSPSSVVDPSGAFSRSNS 558

  Fly   377 ----ERKKLRTDKSDLLGQVKQLCASLQEKEQELRDFIRNYQERVRETETTNAKISGDRDRERFQ 437
                |...||......|.:...|..|:.|:|.|......:.|::..|       ::...|.:...
  Fly   559 HASFETHSLRRQSKQRLSEENALVRSMAEQEWEKLQQAAHAQQQAYE-------LASAADCDDSD 616

  Fly   438 LLKQA----------RDEAERSLALAQQLSARDLQLQRLQEQLQ--EARRQ-------------- 476
            :|..|          .|....::.|.:||.|.:.:::.:||:.|  |||.:              
  Fly   617 VLYAAATDMMSPSGHTDAQTLAMMLQEQLDAINNEIRLIQEEKQSTEARAEELESRVGSLEHVNL 681

  Fly   477 -LTGCLSDQESLHSFAPLTPPSAASG-----------MLSQMAAASGMGGGLAGMRGTTEDSGRG 529
             ..|...|::|.......||.|....           :||..|:...:.||::    ||.||..|
  Fly   682 LARGRSMDRQSPPMSGRSTPNSPQRDFMQKYHTLNLPVLSSDASREELHGGMS----TTGDSSSG 742

  Fly   530 NS---LSAFSGSLSGGSGATAGDRNSCSNDS-GLR-NSSDRES-TGGELNFSDGTCDNGPCITVD 588
            .:   |:|.|..|...:.|.|..:......| ||. |:|...: |||.:..|.            
  Fly   743 GAASPLTARSMRLERVAQALAHSQEELRRRSIGLNPNASVAPNHTGGHMPLSS------------ 795

  Fly   589 PDSISLVSSQNMYQFGTPKERSPTLSPLNSAAYS----RSVEQLGSPVDPEGPGNGAISRKFANA 649
                        :.:|        ||||:|...|    |....:||....:.|.:| :||:.|.|
  Fly   796 ------------HSYG--------LSPLSSRYGSQESLRHYNTMGSMSMLQTPTSG-VSREAAAA 839

  Fly   650 SKSGPLGARNGRGGTW-----------------------GSISRVFARSRNKNKALSADG--VTE 689
            :.....|.::..|..:                       |::|...:...:...|:|..|  :..
  Fly   840 AVQKKKGIKSSLGRFFSKKEKVKGVKDTLPDGSPSMMSIGNLSIGLSEVDSNYDAMSMTGGMMPR 904

  Fly   690 YADYSWNPLTEEGYAEKLR-------LLREASQ--LPIDRWRATQVLAWLEVALGMPQ-YSARCA 744
            .|....:.::...|..:.:       ||.||.:  .|...|....::||||:.:|||. |.|.|.
  Fly   905 IASSQGSKISSVDYGRQKKEHDYRNDLLGEAMKAGTPFALWNGPTIVAWLELWVGMPAWYVAACR 969

  Fly   745 ENVKSGKVLLELNDVELEAGLGLAHPMHRKKLRLAIEEQ------RRPEMVRYPL-ITQLGHTWV 802
            .|||||.::..|:|.|::..:|:::|:||.||||||:|.      ..|:..|..| ...:.|.|:
  Fly   970 ANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPQTSRTTLAFGDMNHEWI 1034

  Fly   803 ATEWLPDIGLPQYAEPFVQSLVDARMLDTLSKKELEKFLGVTRKFHQASIVHGIHVLRIVKYDRQ 867
            ...|||.:|||||...|::.||||||||.|:||:|...|.:...||:.|:.:||.:|:.:.|||.
  Fly  1035 GNYWLPGLGLPQYRTTFMECLVDARMLDHLTKKDLRGQLKMVDSFHRTSLQYGISMLKRLNYDRT 1099

  Fly   868 TLAMRRVQSETVDTDPIVWTNQRFIRWVRSIDLGEYADNLKDSGVHGGLVVLEPSFSGDTMATAL 932
            .|..||..||....|.:||:|:|.||||.||.|.|||:||.:|||||||:.|:..|..:.|..||
  Fly  1100 ELEHRRKMSENGLCDVLVWSNERVIRWVGSIGLKEYANNLLESGVHGGLMALDEGFDANAMGLAL 1164

  Fly   933 GIPPSKNIIRRHLNTEFDALILPA---RATLGQGIRSGCGVVPLT 974
            .||......|:.|:|||:.|:..|   |....|...| |...|.|
  Fly  1165 QIPTQNAQARQILDTEFNNLLQIATDRRPENEQRSASXCSYSPPT 1209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-gammaNP_001097414.1 TBPIP <341..437 CDD:284512 20/130 (15%)
SAM_kazrin_repeat1 718..787 CDD:188963 30/75 (40%)
SAM 719..781 CDD:197735 28/62 (45%)
SAM_kazrin_repeat2 796..860 CDD:188966 29/63 (46%)
SAM 805..860 CDD:197735 27/54 (50%)
SAM_kazrin_repeat3 882..953 CDD:188969 36/70 (51%)
SAM 885..>934 CDD:197735 28/48 (58%)
Liprin-alphaNP_001260155.1 NAT_SF <26..>106 CDD:302625
COG1340 35..391 CDD:224259 40/253 (16%)
Taxilin 250..522 CDD:286771 47/314 (15%)
SYCE1 279..>404 CDD:291886 15/134 (11%)
SAM_liprin-alpha1,2,3,4_repeat1 942..1012 CDD:188961 30/69 (43%)
SAM 942..1008 CDD:197735 29/65 (45%)
SAM_liprin-alpha1,2,3,4_repeat2 1029..1094 CDD:188964 30/64 (47%)
SAM 1038..1092 CDD:197735 27/53 (51%)
SAM_liprin-alpha1,2,3,4_repeat3 1114..1185 CDD:188967 36/70 (51%)
SAM 1115..1186 CDD:197735 36/70 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I7334
eggNOG 1 0.900 - - E1_KOG0249
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D22196at6960
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.820

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