DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Liprin-gamma and syd-2

DIOPT Version :9

Sequence 1:NP_001097414.1 Gene:Liprin-gamma / 37552 FlyBaseID:FBgn0034720 Length:1152 Species:Drosophila melanogaster
Sequence 2:NP_509768.1 Gene:syd-2 / 181255 WormBaseID:WBGene00006364 Length:1139 Species:Caenorhabditis elegans


Alignment Length:955 Identity:244/955 - (25%)
Similarity:386/955 - (40%) Gaps:229/955 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 NSNLIA--AGHLAQA-AGPAHNAPSSGSALNAVDKRNANLSEPDQDLPPNLNVNLSPNPSLA--- 261
            ||:|.|  |.:.|:| ...|.|||.:||..:....|...:.|..:.:...|..:|..:..:.   
 Worm   206 NSSLKARIATYAAEAEEAMASNAPINGSISSESANRLIEMQEALERMKTELANSLKQSTEITTRN 270

  Fly   262 ------LGAPHSPTSAASAALLLLES--C--DGNRND--------ESRFHHLHSAPRPEATMKLR 308
                  |........||..:::.|::  |  |..|.|        ||||   .:|.| |:|. :|
 Worm   271 AELEDQLTEDAREKHAAQESIVRLKNQICELDAQRTDQETRITTFESRF---LTAQR-ESTC-IR 330

  Fly   309 EENDRLNAELLR--------------LRRLLELSTD---GAVGGVDTAPEMEA----------VA 346
            :.||:|..:|..              |:..|||:..   .::...::.|.:||          .|
 Worm   331 DLNDKLEHQLANKDAAVRLNEEKVHSLQERLELAEKQLAQSLKKAESLPSVEAELQQRMEALTAA 395

  Fly   347 SGEGSAAKERIERLESELRSVKNQLLTMRLERKKLRTDKSDLLGQV--KQLCASLQEKEQELRDF 409
            ..:..:|:|||:||:..::.:..: |...::|:::..:.|..|...  |.|..|....:..|::.
 Worm   396 EQKSVSAEERIQRLDRNIQELSAE-LERAVQRERMNEEHSQRLSSTVDKLLSESNDRLQLHLKER 459

  Fly   410 IRNYQERVRETETTNA--KI--SGDRDRERFQLLKQA-RDEAERSLALAQQL-SARDLQLQR--- 465
            ::...::.|.|:..:.  ||  ..:|.::|.|...:: |.|.|   ||.||| :||..|.|.   
 Worm   460 MQALDDKNRLTQQLDGTKKIYDQAERIKDRLQRDNESLRQEIE---ALRQQLYNARTAQFQSRMH 521

  Fly   466 ----------LQEQLQEA----------------------------------------------- 473
                      :|:|.|.:                                               
 Worm   522 AIPFTHAQNIVQQQPQASIAQQSAYQMYKQQPAQQYQTVGMRRPNKGRISALQDDPNKVQTLNEQ 586

  Fly   474 ---RRQLTGCLSDQESLHSFAP---------LTPPSAA------SGMLSQMAAASGMGGGLAGMR 520
               |.|....|::.:...|.:|         |..|:.|      ..|.|.|...|||.||:.|..
 Worm   587 EWDRLQQAHVLANVQQAFSSSPSLADVGQSTLPRPNTAVQHQQDDMMNSGMGMPSGMQGGMQGGM 651

  Fly   521 GTTED-----SGRGNSLSAFSGSLSGGSGATAGDRNSCSNDSGLRNSSDRESTGGELNFSDGTCD 580
            |..:|     |...:.|.|.:..:.    ....:::.....:.....|.||       |.|   |
 Worm   652 GGGQDAQMLASMLQDRLDAINTEIR----LIQQEKHHAERVAEQLERSSRE-------FYD---D 702

  Fly   581 NGPCITVDPDSISLVSSQNMYQFGTPKERSPTLSPLNSAAYSRSVEQLGSPV------------- 632
            .|......|.:...:.:...:::.|        .|.|.:. .|..:..|:|.             
 Worm   703 QGISTRSSPRASPQLDNMRQHKYNT--------LPANVSG-DRRYDIYGNPQFVDDRMVRDLDYE 758

  Fly   633 ---------------DPEGPGNGAISRKFANASKSGPLGARNGRGGTWGSISRVFARSRNKNKAL 682
                           |...|.:...|      |..|.||.:..|..:...: :...|..||.|..
 Worm   759 PRRGYNQFDEMQYERDRMSPASSVAS------STDGVLGGKKKRSNSSSGL-KTLGRFFNKKKNS 816

  Fly   683 SADGVTEYADYSWNPLT-EEG---------YAEKLRLLREA--SQLPIDRWRATQVLAWLEVALG 735
            |:|......|||....: .||         ..:|..||.||  ::.|...|....|:||||:.:|
 Worm   817 SSDLFKRNGDYSDGEQSGTEGNQKADYDRRKKKKHELLEEAMKARTPFALWNGPTVVAWLELWVG 881

  Fly   736 MPQ-YSARCAENVKSGKVLLELNDVELEAGLGLAHPMHRKKLRLAIEEQ------RRPEMVRYPL 793
            ||. |.|.|..|||||.::..|:|.|::..:|:::|:||.||||||:|.      ..|...|..|
 Worm   882 MPAWYVAACRANVKSGAIMSALSDQEIQKEIGISNPLHRLKLRLAIQEMVSLTSPSAPRTARLTL 946

  Fly   794 -ITQLGHTWVATEWLPDIGLPQYAEPFVQSLVDARMLDTLSKKELEKFLGVTRKFHQASIVHGIH 857
             ...:.|.::..:|||.:||.||...|::.|:|||||:.|||::|...|.:...||:.|:.:||.
 Worm   947 AFGDMNHEYIGNDWLPCLGLAQYRSAFMECLLDARMLEHLSKRDLRTHLRMVDTFHRTSLQYGIM 1011

  Fly   858 VLRIVKYDRQTLAMRRVQSETVDTDPIVWTNQRFIRWVRSIDLGEYADNLKDSGVHGGLVVLEPS 922
            .|:.|.||::.||.||...:.::||.:||:|:|..|||..|.||.::.||.|||:||.|:.|:.:
 Worm  1012 CLKKVNYDKKVLADRRKACDNINTDLLVWSNERVQRWVEEIGLGVFSRNLVDSGIHGALIALDET 1076

  Fly   923 FSGDTMATALGIPPSKNIIRRHLNTEFDALILPARATLGQGIRSG 967
            |.....|.||.|.......|:.|..:|..|:...|.......|||
 Worm  1077 FDASAFAYALQIGSQDVPNRQLLEKKFIGLVNDHRQQSDPHPRSG 1121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-gammaNP_001097414.1 TBPIP <341..437 CDD:284512 23/111 (21%)
SAM_kazrin_repeat1 718..787 CDD:188963 31/75 (41%)
SAM 719..781 CDD:197735 29/62 (47%)
SAM_kazrin_repeat2 796..860 CDD:188966 25/63 (40%)
SAM 805..860 CDD:197735 24/54 (44%)
SAM_kazrin_repeat3 882..953 CDD:188969 28/70 (40%)
SAM 885..>934 CDD:197735 23/48 (48%)
syd-2NP_509768.1 BAR <323..474 CDD:299863 32/153 (21%)
Ferritin_like <667..>728 CDD:294190 11/82 (13%)
SAM_liprin-alpha1,2,3,4_repeat1 864..934 CDD:188961 31/69 (45%)
SAM 864..930 CDD:197735 30/65 (46%)
SAM_liprin-alpha1,2,3,4_repeat2 951..1016 CDD:188964 26/64 (41%)
SAM 959..1015 CDD:197735 25/55 (45%)
SAM_liprin-alpha1,2,3,4_repeat3 1036..1107 CDD:188967 28/70 (40%)
SAM 1039..1109 CDD:197735 28/69 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I6565
eggNOG 1 0.900 - - E1_KOG0249
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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