DRSC/TRiP Functional Genomics Resources

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Protein Alignment Liprin-gamma and ppfia3

DIOPT Version :9

Sequence 1:NP_001097414.1 Gene:Liprin-gamma / 37552 FlyBaseID:FBgn0034720 Length:1152 Species:Drosophila melanogaster
Sequence 2:XP_012823004.1 Gene:ppfia3 / 100491659 XenbaseID:XB-GENE-6040150 Length:1214 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-gammaNP_001097414.1 TBPIP <341..437 CDD:284512
SAM_kazrin_repeat1 718..787 CDD:188963
SAM 719..781 CDD:197735
SAM_kazrin_repeat2 796..860 CDD:188966
SAM 805..860 CDD:197735
SAM_kazrin_repeat3 882..953 CDD:188969
SAM 885..>934 CDD:197735
ppfia3XP_012823004.1 Smc <145..497 CDD:224117
SAM_liprin-alpha1,2,3,4_repeat1 855..925 CDD:188961
SAM_liprin-alpha1,2,3,4_repeat2 972..1037 CDD:188964
SAM_liprin-alpha1,2,3,4_repeat3 1057..1128 CDD:188967
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 67 1.000 Domainoid score I9654
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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