DRSC/TRiP Functional Genomics Resources

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Protein Alignment Liprin-gamma and kazna

DIOPT Version :9

Sequence 1:NP_001097414.1 Gene:Liprin-gamma / 37552 FlyBaseID:FBgn0034720 Length:1152 Species:Drosophila melanogaster
Sequence 2:XP_021333827.1 Gene:kazna / 100003663 ZFINID:ZDB-GENE-081105-97 Length:814 Species:Danio rerio


Alignment Length:813 Identity:250/813 - (30%)
Similarity:390/813 - (47%) Gaps:114/813 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 LHSAPRPEATMKLREENDRLNAELLRLRRLLELSTDGAVGGVDTA-------------------- 339
            |.....|:...:.:::.:..:|.:.|.:.|.||...|.|...:|:                    
Zfish    43 LEEPGEPQEHQQQQQQQNHQDAPVQRQKALTELGQKGDVASQETSLDKVLLHEEVLRLQEEVSVL 107

  Fly   340 --------PEMEAVASG------EGSAAKERIERLESELRSVKNQLLTMRLERKKLRTDKSDLLG 390
                    .|:|....|      ..|..:.::.:.|.||...|..|..|:.:||:||.:::||:.
Zfish   108 KQVREMLNRELEETGGGCSVELMSVSQLRVQLTQKEQELDRAKEALQAMKTDRKRLRLERTDLVN 172

  Fly   391 QVKQLCASLQEKEQELRDFIRNYQERVRETETTNAKISGDRD---RERFQLLKQARDEAERSLAL 452
            |::||..:|:.:|::||||||||::..:|:|.....::.::|   ||::.|.:|.::..|.:.||
Zfish   173 QMQQLYTTLESREEQLRDFIRNYEQHRKESEDAVRVLAREKDLLEREKWDLRRQTKEATEHAGAL 237

  Fly   453 AQQLSARDLQLQRLQEQLQEARRQLTGCLSDQESLHSFAPLTPPSAASGMLSQMAAASGMGGGLA 517
            ...|..::.:::.|:.:|......:...|..:..:.|  |..|.|..:....|..|.        
Zfish   238 RSALDLKESRIKELEAELTMMSSFMAQKLESRVFVRS--PERPASPKTVSAKQSLAT-------- 292

  Fly   518 GMRGTTEDSGRGNSLSAFSGSLSGGS---------GATAGDRNSCSNDSGLRNSSDRESTGGELN 573
                .|:|..:.:||:..:.::..|:         ..||..|.|..|   |.:|.||:       
Zfish   293 ----LTKDVPKRHSLAMPTETVVNGNQEWAMHAELPLTAAIRQSQQN---LYHSIDRQ------- 343

  Fly   574 FSDGTCDNGPCITVDPDSISLVSSQNMYQFGTPKERSPTLSPLNSAAYSRSV---EQLGSPVDPE 635
                .....||: .|.|.||::||       .....||..|...|.....||   |:..:|.|..
Zfish   344 ----VLKASPCV-CDGDGISMMSS-------AAARISPCHSKQASVMSDASVMEGERSSTPSDSP 396

  Fly   636 GPGNGAISRKFANASKSGPLGARNGRGGTWGSISRVFARSRNKNKAL------SADGVTEYADYS 694
            .....::.....:..:......:...|  .||:||||.|.:.: |::      .:|.::..|..|
Zfish   397 RHRTHSLCNSLEDLEEQRRRKKKERMG--LGSLSRVFGRGKQR-KSMDPTLFDDSDSLSSPARLS 458

  Fly   695 WNPLTEEGYAEKLRLLREASQLPIDRWRATQVLAWLEVALGMPQYSARCAENVKSGKVLLELNDV 759
            .:....|...::|:.:..|...|:.||||..|.|||||.:.||.|...||:|||||||||.|.|.
Zfish   459 VSLSECEEQLDRLQQVELARSAPMCRWRAGTVQAWLEVIMAMPMYMRACADNVKSGKVLLVLTDE 523

  Fly   760 ELEAGLGLAHPMHRKKLRLAIEEQRRPEMVR-YPLITQLGHTWVATEWLPDIGLPQYAEPFVQSL 823
            :|...||:::.|||:|||||||:.|..|... .....:|.|.|||..||.|:|||||::.|...|
Zfish   524 DLGNVLGISNSMHRRKLRLAIEDYRDAEAGHGLSKAAELDHHWVAQAWLTDVGLPQYSQFFHTHL 588

  Fly   824 VDARMLDTLSKKELEKFLGVTRKFHQASIVHGIHVLRIVKYDRQTLAMRRVQSETVDTDPIVWTN 888
            ||.|:|.||::.:|||.|.|::|.||.|::.||.:|..:.:|::.|..||.:.|..:|||.|||.
Zfish   589 VDGRLLSTLTRADLEKHLHVSKKAHQNSLLLGIQLLHTLNFDKEILQSRRSECENQNTDPAVWTC 653

  Fly   889 QRFIRWVRSIDLGEYADNLKDSGVHGGLVVLEPSFSGDTMATALGIPPSKNIIRRHLNTEFDALI 953
            ||.|:|::.|||.|:||||:.|||||.::||:|||..|||||||.||.:|:::|.||:.|..||:
Zfish   654 QRIIKWIKEIDLKEFADNLQTSGVHGAVMVLDPSFRSDTMATALCIPSNKHMVRHHLSEEMKALV 718

  Fly   954 LPARATLGQGIRSGCGVVPLTGPGGLQHYATTD-------------RRSSGNLRISAWKGSQSSL 1005
            ..|||.|.|.:.      ||..|..|...::..             ||....|.:|....:..::
Zfish   719 SAARAGLEQEVE------PLGTPPTLHRQSSLSSSSPSCHDDQQSLRRVKQQLGLSPKNLTARNI 777

  Fly  1006 SKAFRFNSKPHRTGDRSSFGNSTSPTPSYSSSE 1038
            |...|..|.|.......|......|...:|::|
Zfish   778 SHQSRSGSFPRNGLQEVSLQRERCPVRHFSAAE 810

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-gammaNP_001097414.1 TBPIP <341..437 CDD:284512 34/104 (33%)
SAM_kazrin_repeat1 718..787 CDD:188963 40/68 (59%)
SAM 719..781 CDD:197735 37/61 (61%)
SAM_kazrin_repeat2 796..860 CDD:188966 32/63 (51%)
SAM 805..860 CDD:197735 27/54 (50%)
SAM_kazrin_repeat3 882..953 CDD:188969 42/70 (60%)
SAM 885..>934 CDD:197735 32/48 (67%)
kaznaXP_021333827.1 SMC_N 67..>269 CDD:330553 50/201 (25%)
SAM_kazrin_repeat1 482..551 CDD:188963 40/68 (59%)
SAM_kazrin_repeat2 561..625 CDD:188966 32/63 (51%)
SAM_kazrin_repeat3 647..718 CDD:188969 42/70 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581786
Domainoid 1 1.000 85 1.000 Domainoid score I8134
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H16235
Inparanoid 1 1.050 334 1.000 Inparanoid score I2397
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D255905at33208
OrthoFinder 1 1.000 - - FOG0006459
OrthoInspector 1 1.000 - - otm24804
orthoMCL 1 0.900 - - OOG6_106939
Panther 1 1.100 - - O PTHR12776
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4710
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.900

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