DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gp150 and alrm

DIOPT Version :10

Sequence 1:NP_477049.2 Gene:Gp150 / 37549 FlyBaseID:FBgn0013272 Length:1076 Species:Drosophila melanogaster
Sequence 2:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster


Alignment Length:526 Identity:121/526 - (23%)
Similarity:210/526 - (39%) Gaps:97/526 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 LTDVGLAIINPDTF------VGNKKLRMLTISGN-------DLSVMSSIHYLLKSSSI---EELD 396
            |..:.:.:|.|.::      .|:.:||.|.:..:       ::.:..|.:.:|..:.|   ..|.
  Fly     7 LLSLQVVLILPPSYHLATPSSGSGQLRRLWLQDHCSAGICTNVVIGRSDYVILSQAPIGGTTMLT 71

  Fly   397 FSRNNLMELNPKAFSHLSNVVYINLSQNSLKKLPEKAFEKVTLLEELDLSYNSLTELPRDIFNGT 461
            |..:::.::....|....::..:.:...||:...:..||..:.|..|.|.||.|.::|::||.|.
  Fly    72 FLNSSIAKIPHLLFDTFPDLQVLRMENCSLETFEKPQFEGASNLMSLFLGYNRLKDIPKNIFLGA 136

  Fly   462 -TLSILHLKYNTF----NGDLHFGTKDLQQLDLSFNSIVQVHHSMFDKMPGLTNLNLKGNGIKKI 521
             .|:.|||:.|..    |...| ..|::::|.|:.|.:.|:...:|..|..|.:|||.||.:..:
  Fly   137 DNLATLHLQGNQLKQLGNHSFH-ALKEVKELSLAENQLEQISLGVFSGMRKLMDLNLAGNRLDAL 200

  Fly   522 QPDSFLTLKNLRHIDLSINDLDQISGMLFFKNSELDVIRLNDNPRLSQLPTDG--FLSYSGEFTV 584
            ....|....||..::|:.|.         |...|.::::|  .|..:||...|  |...:..||:
  Fly   201 PRGVFDRNLNLTKLNLARNR---------FTAFESELLKL--QPVFTQLDISGNIFQELTLNFTM 254

  Fly   585 YYLDISNCAIGPLGHKAFSTMPHLTTLKLAWNNINHLPREIFTGLHKLIDLDLSNNLITRMDDLI 649
              ||::      :.|..  .:..||               ::..:|   :|||.||.:..|..:.
  Fly   255 --LDVA------IAHSC--DLRRLT---------------VYGVIH---ELDLHNNSLREMPHIP 291

  Fly   650 FMDNGELTKLSLAGNPISRLS---VRLFLPLHQLRCLDVNDCELTTLLSDRDLGAGYKIFDSLRS 711
            ...|  ::.|.|:.||:..|.   :|.|..|.:|........||...|        :|....|:.
  Fly   292 LAAN--VSSLDLSHNPLGNLQGNPLRRFTSLLRLNLSATGAHELPEGL--------FKKQSHLQM 346

  Fly   712 FNASGNLIKKISSEDVKSFKNLRSLDITNNPLKCTPDFQEFISYVTLQMQMTPKRLPVLANLEDD 776
            .:.|||.|..:......|.|.|:......|...|        .::.|.|....||..:  :..:|
  Fly   347 LDISGNSIYSLKITIFDSLKALQYFYFQQNNWNC--------DFLQLLMSSFVKRKDI--SFMED 401

  Fly   777 ATIVQLETLAQAG---W--SSLAHEVCKHAEGSDLLDEKKADSAEAK-----LEKRLKESVKKLN 831
            .|..:|......|   |  |....:.|: :.|||...|......|.|     :||:..:..:.|.
  Fly   402 ITAPELVDDYVDGIACWYESDKQSKKCE-SGGSDAAMELSVVRNEIKTFTELVEKKFVKVYRMLE 465

  Fly   832 EDEAKL 837
            |.:.||
  Fly   466 EMKMKL 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gp150NP_477049.2 LRR 341..758 CDD:443914 98/435 (23%)
leucine-rich repeat 343..366 CDD:275380 4/23 (17%)
leucine-rich repeat 367..391 CDD:275380 5/30 (17%)
leucine-rich repeat 393..415 CDD:275380 3/21 (14%)
leucine-rich repeat 416..439 CDD:275380 4/22 (18%)
leucine-rich repeat 440..483 CDD:275380 17/47 (36%)
leucine-rich repeat 463..481 CDD:275380 7/21 (33%)
leucine-rich repeat 484..507 CDD:275380 6/22 (27%)
leucine-rich repeat 508..531 CDD:275380 7/22 (32%)
leucine-rich repeat 532..569 CDD:275380 7/36 (19%)
leucine-rich repeat 556..583 CDD:275380 6/28 (21%)
leucine-rich repeat 570..607 CDD:275380 8/38 (21%)
leucine-rich repeat 608..631 CDD:275380 2/22 (9%)
leucine-rich repeat 632..655 CDD:275380 7/22 (32%)
leucine-rich repeat 656..674 CDD:275380 6/20 (30%)
leucine-rich repeat 733..745 CDD:275378 2/11 (18%)
alrmNP_651393.1 leucine-rich repeat 91..114 CDD:275380 4/22 (18%)
LRR <100..426 CDD:443914 95/385 (25%)
leucine-rich repeat 115..138 CDD:275380 10/22 (45%)
leucine-rich repeat 139..162 CDD:275380 7/23 (30%)
leucine-rich repeat 163..186 CDD:275380 6/22 (27%)
leucine-rich repeat 187..210 CDD:275380 7/22 (32%)
leucine-rich repeat 211..283 CDD:275380 23/110 (21%)
leucine-rich repeat 284..319 CDD:275380 9/36 (25%)
leucine-rich repeat 320..343 CDD:275380 6/30 (20%)
leucine-rich repeat 344..365 CDD:275380 5/20 (25%)

Return to query results.
Submit another query.