DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wdp and lrrc4.1

DIOPT Version :9

Sequence 1:NP_001286712.1 Gene:wdp / 37548 FlyBaseID:FBgn0034718 Length:677 Species:Drosophila melanogaster
Sequence 2:XP_005164844.1 Gene:lrrc4.1 / 565021 ZFINID:ZDB-GENE-041210-129 Length:858 Species:Danio rerio


Alignment Length:823 Identity:168/823 - (20%)
Similarity:258/823 - (31%) Gaps:292/823 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LFLIVVANATPTPARTPTGCPADCTCSLSQHTHKPLYHLKC-------------NSTRGLRLTEK 63
            |||:|.|......|..|.|||.||:|      :..|..:.|             ::||.|.|.|.
Zfish    25 LFLMVQACVEVVAAAGPQGCPTDCSC------NNQLSKVVCTRRGLTRVPPGIPSTTRHLNLMEN 83

  Fly    64 TFQSTVPVHSI-DLSHL-------------------NLTRLSHL-----------------LDKL 91
            ..:| |.|.|. :|.||                   .||.|:.|                 |.||
Zfish    84 AIES-VQVDSFRNLHHLEVLQLGRNAIRQIEVGAFSGLTNLNTLELFDNRLTVVPSGAFEYLSKL 147

  Fly    92 PELTSADLSHNQLK----------------DLGHLGK---------------------------- 112
            .||.   |.:|.::                |||.|.|                            
Zfish   148 RELW---LRNNPIESIPSYAFNRVPSLMRLDLGELRKLEYISDGAFEGLVNLKYLNLGMCNIRGE 209

  Fly   113 --------GLKRLNLKHNQLTSDK---------LRKL-----------------PQHLQVLNLQH 143
                    ||:.|.:..|.....|         |:||                 ...|..|||.|
Zfish   210 MPNFTPLVGLEELEISENLFPEIKPGSFRGLSSLKKLWIMNSQIGLIERNAFDDLASLVELNLAH 274

  Fly   144 NNITHLPLEL-THMHQLHQLELSHNAINCSCQTLEVRNWLVERIVYMEHPV------VCSYPLEF 201
            ||::.||.:| |.:..|.:|.|.||..||.|.:|.:..||.|.|     |.      .|..|...
Zfish   275 NNLSSLPHDLYTPLKYLVELHLHHNPWNCGCDSLWLARWLREYI-----PTNSTCCGRCHSPAHM 334

  Fly   202 RGRSWLQLKQDEI----CKKEKYQWFDTEENELMMGDQP--AAVSAEREDEEELGKDFLP----I 256
            |||..::|.:.:.    |...            .:.|.|  ..:||||..|.:.....:.    :
Zfish   335 RGRQLVELDRGDTGAMQCSAP------------FIADAPRDLNISAERVAELKCRTAAMSAVRWL 387

  Fly   257 VGNPAATAKKVRSPQIPLPSDQVEGSGDLSETNMELKLPEETVAEPEAAESQLVDAAASPSVLEE 321
            :.|..........|::.:.:|     |.|:.:|:        :|......:.:|..||..|....
Zfish   388 LPNGTILTHASSHPRLTVLND-----GTLNFSNV--------LAGDTGMYTCMVSNAAGNSNASA 439

  Fly   322 HIVKDEDEDDEGSGSGGGLLII---------PDPSKVKITSEDDIDSDGKPEESDVRPLENPENS 377
            ::.....|.:..:.|....:.:         |.|.....|:.....:...|.      :..|...
Zfish   440 YLNVSAAELNTSNLSYFTTVTVEVLSPTSEMPKPKTTTTTAGASTTTTASPS------VFQPVFI 498

  Fly   378 ENPDTVFSNKIGIYEGDQEEKKPVEEDNIVPVVMTNLDTGLESDVVTDGPLDSSKESED--ILTA 440
            ..|..:.          |....|....:::|          .|.|.|..|.:.:..|.|  :.|.
Zfish   499 STPTVLL----------QSTDTPPSRPSVIP----------GSKVTTGKPPNPASTSLDEVMKTT 543

  Fly   441 KIGKPKDDSSAIYYLLAVIGLIVVGLVLFVAIKRCKYDSNAAARDAEAQRQTELLDMDKK----- 500
            ||        .|...:||..|..:.|::|..:::.....:..|    :.|..|::.:|::     
Zfish   544 KI--------IIGCFVAVTLLAAIMLIVFYKLRKRHQQRSTVA----SARTVEIIPVDEELPPSA 596

  Fly   501 ---------QLGKPLHKNGHGN----GQEHSPLIGEKTKLDEAQIVKKPYENGEAKDGAGQQPLL 552
                     ||..|..:| |.:    ...|....|.|.||:.:  ..||     .:|.:..||  
Zfish   597 SAANIADEGQLSLPEIRN-HNSIYKADYTHKFDYGYKPKLEYS--THKP-----KQDFSIHQP-- 651

  Fly   553 NGNGSANGGTKEAPETGEPAAHEYYPITPRYPTPQSPRASKYAQQQQLAEQNNNEPDGAYLPSSP 617
                      |....|.:|.|...|..|..|            ..|:|.:.::......::...|
Zfish   652 ----------KSDYNTYKPKADYMYQPTLEY------------SSQKLTDYSHKSLPDYHVHKKP 694

  Fly   618 KSGRYSPVYSPETGRVKIKLTETPKP-----KTPMLVTRSKSN 655
            :...|...|.......|   :.||||     ||...|.:||::
Zfish   695 EQSPYKHGYGTHKPDYK---SHTPKPDFSPFKTEYGVPKSKTD 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdpNP_001286712.1 LRR_RI <31..176 CDD:238064 62/273 (23%)
leucine-rich repeat 47..70 CDD:275378 8/35 (23%)
LRR_8 71..124 CDD:290566 25/141 (18%)
leucine-rich repeat 73..93 CDD:275378 11/56 (20%)
leucine-rich repeat 94..112 CDD:275378 7/33 (21%)
LRR_8 112..169 CDD:290566 25/119 (21%)
leucine-rich repeat 114..134 CDD:275378 7/45 (16%)
leucine-rich repeat 136..158 CDD:275378 11/22 (50%)
leucine-rich repeat 159..171 CDD:275378 5/11 (45%)
lrrc4.1XP_005164844.1 LRRNT 43..77 CDD:214470 9/39 (23%)
leucine-rich repeat 54..73 CDD:275380 2/18 (11%)
leucine-rich repeat 75..98 CDD:275380 10/23 (43%)
LRR_8 76..133 CDD:290566 15/57 (26%)
LRR_RI 93..323 CDD:238064 52/237 (22%)
leucine-rich repeat 99..122 CDD:275380 2/22 (9%)
LRR_8 121..206 CDD:290566 15/87 (17%)
leucine-rich repeat 123..146 CDD:275380 3/22 (14%)
leucine-rich repeat 147..170 CDD:275380 5/25 (20%)
leucine-rich repeat 171..195 CDD:275380 5/23 (22%)
leucine-rich repeat 196..218 CDD:275380 0/21 (0%)
LRR_8 218..277 CDD:290566 14/58 (24%)
leucine-rich repeat 219..242 CDD:275380 4/22 (18%)
leucine-rich repeat 243..266 CDD:275380 3/22 (14%)
leucine-rich repeat 267..288 CDD:275380 11/20 (55%)
IG_like 361..443 CDD:214653 17/94 (18%)
Ig 372..443 CDD:299845 12/83 (14%)
STOP 616..799 CDD:283000 32/153 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24369
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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