DRSC/TRiP Functional Genomics Resources

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Protein Alignment wdp and Lrrc4b

DIOPT Version :10

Sequence 1:NP_611661.1 Gene:wdp / 37548 FlyBaseID:FBgn0034718 Length:677 Species:Drosophila melanogaster
Sequence 2:NP_001258010.1 Gene:Lrrc4b / 308571 RGDID:1307121 Length:709 Species:Rattus norvegicus


Alignment Length:708 Identity:139/708 - (19%)
Similarity:227/708 - (32%) Gaps:231/708 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IVVANATPTPARTPTGCPADCTCSLSQH----THKPLYHLKCN---STRGLRLTEKTFQSTVPVH 72
            :.|.:|....:...|.|||.|:||....    |.:.|..:..:   :||.|.|.|.:.|......
  Rat    43 VAVTSAAGGGSPPATSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDT 107

  Fly    73 SIDLSHLNLTRLS-HLLDK--------LPELTSADLSHNQLK----------------------- 105
            ...|.||.:.:|| :|:.|        ||.|.:.:|..|:|.                       
  Rat   108 FKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 172

  Fly   106 -----------------DLGHLGKGLKRL------------NLKHNQLTSDKLRKLP-------- 133
                             |||.    ||||            ||::..|....|:.:|        
  Rat   173 ESIPSYAFNRVPSLRRLDLGE----LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 233

  Fly   134 -----------------------------QHLQV----------------LNLQHNNITHLPLEL 153
                                         .|.||                |||.|||:..||.:|
  Rat   234 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 298

  Fly   154 -THMHQLHQLELSHNAINCSCQTLEVRNWLVERIVYMEHP------VVCSYPLEFRGRSWLQLKQ 211
             |.:|:|.::.|:||..:|:|..|.:..||.|.:     |      ..|..|...:||...:|.|
  Rat   299 FTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETV-----PSNTTCCARCHAPAGLKGRYIGELDQ 358

  Fly   212 DEI-CKKEKYQWFDTE-ENELMMGDQPAAVSAEREDEEELGKDFLPIVGNPAATAKKVRSPQIPL 274
            ... |    |.....| ..:|.:.:..||....|........::|    .|..|.....|.::.:
  Rat   359 SHFTC----YAPVIVEPPTDLNVTEGMAAELKCRTGTSMTSVNWL----TPNGTLMTHGSYRVRI 415

  Fly   275 PSDQVEGSGDLSETNMELK-LPEETVAEPEAAESQLVDAAASPSVLEEHIVKDEDEDDEGSGSGG 338
               .|...|.|:.||:.:: ..:.|.....:|.:....|..:.|.::.  |........|.|.||
  Rat   416 ---SVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVSAVDP--VAAGGPGGGGPGGGG 475

  Fly   339 GLLIIPDPSKVKITSEDDIDSDGKPEESDVRPLENPENSENPDTVFSNKIGIYEGDQ-EEKKPVE 402
            |.......:.....:.:.:::  :|.|...:|....:....|.|     .|.:.|.: :...|..
  Rat   476 GAGGAGGYTYFTTVTVETLET--QPGEEAQQPRGTEKEPPGPTT-----DGAWGGGRPDAAAPAS 533

  Fly   403 EDNIVPVVMTNLDTGLESDV-VTDGPLDSSKESEDIL-TAKIGKPKDDSSAIYYLLAVIGLIVVG 465
            .....|...::..|.....| :||...::.|:.:|:: |.||        .|...:|:..:..|.
  Rat   534 ASTTAPAPRSSRPTEKAFTVPITDVTENALKDLDDVMKTTKI--------IIGCFVAITFMAAVM 590

  Fly   466 LVLFVAIKRCKYDSNAAARDAEAQRQTELLDMDKK-------------------------QLGKP 505
            ||.|..:::    .:...:.....|..|:::::.:                         .|..|
  Rat   591 LVAFYKLRK----QHQLHKHHGPTRTVEIINVEDELPAASAVSVAAAAAVAGGAGVGGDSHLALP 651

  Fly   506 L----HKNGH------------------------GNGQEHSPLI---GEKTKLDEAQI 532
            .    |.|.|                        |....|.||:   |.|..:.|.||
  Rat   652 ALERDHLNHHHYVAAAFKAHYGGNPGGGCGAKGPGLNSIHEPLLFKSGSKENVQETQI 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdpNP_611661.1 leucine-rich repeat 47..70 CDD:275378 7/25 (28%)
LRR <72..>169 CDD:443914 43/211 (20%)
leucine-rich repeat 73..93 CDD:275378 8/28 (29%)
leucine-rich repeat 94..112 CDD:275378 7/57 (12%)
leucine-rich repeat 114..134 CDD:275378 9/68 (13%)
leucine-rich repeat 136..158 CDD:275378 12/38 (32%)
leucine-rich repeat 159..171 CDD:275378 4/11 (36%)
Lrrc4bNP_001258010.1 LRRNT 59..92 CDD:214470 9/32 (28%)
LRR <89..>314 CDD:443914 48/228 (21%)
LRR 1 89..110 6/20 (30%)
leucine-rich repeat 90..113 CDD:275380 7/22 (32%)
LRR 2 113..134 6/20 (30%)
leucine-rich repeat 114..137 CDD:275380 6/22 (27%)
LRR 3 137..158 4/20 (20%)
leucine-rich repeat 138..161 CDD:275380 4/22 (18%)
LRR 4 161..182 0/20 (0%)
leucine-rich repeat 162..185 CDD:275380 0/22 (0%)
LRR 5 185..207 7/25 (28%)
leucine-rich repeat 186..210 CDD:275380 7/27 (26%)
LRR 6 210..231 5/20 (25%)
leucine-rich repeat 211..232 CDD:275380 4/20 (20%)
LRR 7 232..253 0/20 (0%)
leucine-rich repeat 233..256 CDD:275380 0/22 (0%)
LRR 8 256..277 3/20 (15%)
leucine-rich repeat 257..280 CDD:275380 3/22 (14%)
LRR 9 280..301 9/20 (45%)
leucine-rich repeat 281..302 CDD:275380 10/20 (50%)
LRRCT 313..363 CDD:214507 14/54 (26%)
I-set 366..455 CDD:400151 17/95 (18%)
Ig strand B 383..387 CDD:409353 1/3 (33%)
Ig strand C 395..399 CDD:409353 0/3 (0%)
Ig strand E 421..425 CDD:409353 2/3 (67%)
Ig strand F 435..440 CDD:409353 1/4 (25%)
Ig strand G 448..451 CDD:409353 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..552 10/62 (16%)

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