DRSC/TRiP Functional Genomics Resources

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Protein Alignment wdp and Lrrc4c

DIOPT Version :10

Sequence 1:NP_611661.1 Gene:wdp / 37548 FlyBaseID:FBgn0034718 Length:677 Species:Drosophila melanogaster
Sequence 2:NP_848840.3 Gene:Lrrc4c / 241568 MGIID:2442636 Length:640 Species:Mus musculus


Alignment Length:685 Identity:142/685 - (20%)
Similarity:235/685 - (34%) Gaps:255/685 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LTAWLALFLIVVANATPTPARTPTGCPADCTCS-------------------LSQHTHKPLYH-- 49
            |...|||.|:|||..    .|..| ||:.|:||                   :|.:|.....|  
Mouse    27 LVVLLALQLLVVAGL----VRAQT-CPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHEN 86

  Fly    50 ----LKCNSTRGLRLTEKTFQSTVPVHSID------LSHLNLTRL-------------------- 84
                :|.||.:.||..|....|...:.:|:      |::||...|                    
Mouse    87 QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 151

  Fly    85 -------------SHLLDKLPELTSADLSHNQLKDLGHLGKGLKR--LNLKHNQLTSDKLRKLP- 133
                         |:..:::|.|...||  .:||.|.::.:|...  .||::..|....||::| 
Mouse   152 ELWLRNNPIESIPSYAFNRIPSLRRLDL--GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 214

  Fly   134 ----------------------------QHLQVL------------------------NLQHNNI 146
                                        .|||.|                        ||.|||:
Mouse   215 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 279

  Fly   147 THLPLEL-THMHQLHQLELSHNAINCSCQTLEVRNWLVERIVYMEHP------VVCSYPLEFRGR 204
            |.||.:| |.:|.|.::.|.||..||:|..|.:..|:.:..     |      ..|:.|...:||
Mouse   280 TLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMA-----PSNTACCARCNTPPNLKGR 339

  Fly   205 SWLQLKQDEICKKEKYQWFDTEENELMMGDQPAAVSAEREDEEEL---GKDFLPIVG--NPAAT- 263
            ...:|.|:         :|......::  :.||.::.......||   ....|..|.  .|..| 
Mouse   340 YIGELDQN---------YFTCYAPVIV--EPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTV 393

  Fly   264 ----AKKVRSPQIPLPSDQVEGSGDLSETNMELK-------LPEETVAEPEAAESQLVDAAAS-- 315
                |.|||   |.:.||     |.|:.||:.::       :...:|....|:.:..|.||.:  
Mouse   394 MTHGAYKVR---IAVLSD-----GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTP 450

  Fly   316 ----PSVLEEHIVKDEDEDDEGSGSGGGLLIIPDPSKVKITSEDDIDSDGKPEESDVRPLENPEN 376
                .:|..|.:...:||......:.|       |:.|       ||.    |.::|.....|::
Mouse   451 FSYFSTVTVETMEPSQDEARTTDNNVG-------PTPV-------IDW----ETTNVTTSLTPQS 497

  Fly   377 SENPDTVFSNKIGIYEGDQEEKKPVEEDNIVPVVMTNLDTGLESDVVTDGPLDSSKESEDILTAK 441
            :.:.:..|:                     :||  |::::|:..       :|     |.:.|.|
Mouse   498 TRSTEKTFT---------------------IPV--TDINSGIPG-------ID-----EVMKTTK 527

  Fly   442 IGKPKDDSSAIYYLLAVIGLIVVGLVLFVAIKRCKYDSNAAARDAEAQRQTELLDMDKKQLG-KP 505
            |        .|...:|:..:..|.||:|..:::..:..|..|    ..|..|::::|.:..| .|
Mouse   528 I--------IIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHA----PTRTVEIINVDDEITGDTP 580

  Fly   506 LHKNGHGNGQEHSPLIG-EKTKLDEAQIVKKPYEN 539
            :        :.|.|:.. |...|:.....|.|:.:
Mouse   581 M--------ESHLPMPAIEHEHLNHYNSYKSPFNH 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdpNP_611661.1 leucine-rich repeat 47..70 CDD:275378 8/28 (29%)
LRR <72..>169 CDD:443914 39/191 (20%)
leucine-rich repeat 73..93 CDD:275378 6/58 (10%)
leucine-rich repeat 94..112 CDD:275378 6/17 (35%)
leucine-rich repeat 114..134 CDD:275378 6/50 (12%)
leucine-rich repeat 136..158 CDD:275378 13/46 (28%)
leucine-rich repeat 159..171 CDD:275378 4/11 (36%)
Lrrc4cNP_848840.3 LRRNT 47..80 CDD:214470 7/32 (22%)
LRR <76..325 CDD:443914 54/255 (21%)
LRR 1 77..98 5/20 (25%)
leucine-rich repeat 78..101 CDD:275380 6/22 (27%)
LRR 2 101..122 3/20 (15%)
leucine-rich repeat 102..125 CDD:275380 4/22 (18%)
LRR 3 125..146 3/20 (15%)
leucine-rich repeat 126..149 CDD:275380 3/22 (14%)
LRR 4 149..170 1/20 (5%)
leucine-rich repeat 150..173 CDD:275380 1/22 (5%)
LRR 5 173..195 7/23 (30%)
leucine-rich repeat 174..198 CDD:275380 7/25 (28%)
LRR 6 198..219 6/20 (30%)
leucine-rich repeat 199..220 CDD:275380 5/20 (25%)
LRR 7 220..241 0/20 (0%)
leucine-rich repeat 221..244 CDD:275380 0/22 (0%)
LRR 8 244..265 4/20 (20%)
leucine-rich repeat 245..268 CDD:275380 3/22 (14%)
LRR 9 268..289 9/20 (45%)
leucine-rich repeat 269..290 CDD:275380 10/20 (50%)
IG_like 360..443 CDD:214653 21/90 (23%)
Ig strand B 371..375 CDD:409390 2/3 (67%)
Ig strand C 383..387 CDD:409390 1/3 (33%)
Ig strand E 409..413 CDD:409390 2/3 (67%)
Ig strand F 423..428 CDD:409390 0/4 (0%)
Ig strand G 436..439 CDD:409390 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 463..482 5/32 (16%)

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