DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5819 and AT5G41750

DIOPT Version :9

Sequence 1:NP_001246458.1 Gene:CG5819 / 37547 FlyBaseID:FBgn0034717 Length:915 Species:Drosophila melanogaster
Sequence 2:NP_198990.3 Gene:AT5G41750 / 834178 AraportID:AT5G41750 Length:1068 Species:Arabidopsis thaliana


Alignment Length:414 Identity:78/414 - (18%)
Similarity:154/414 - (37%) Gaps:103/414 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 IYLDLSSNYISSIGAKTLIGFTSLRTLLLANNSIDSWESLSPNEAFKYAPSLKRLGLDGNRLGSF 144
            |..|.|:....|:|.....|..:|:.|.:..:|.:|..:|...|..:|.|.::.|     ...::
plant   532 ISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIPEDMEYIPPVRLL-----HWQNY 591

  Fly   145 GNGESFELLTSSSLTDLGLSSCGISSIGGDQMVNQLPNLERLNLA-NNQLAQIAALPSRT-LRVL 207
            ......:......|..:.:.|..:..:.|.  :..||||:.:::: :..|.:|..|...| |.:|
plant   592 PRKSLPQRFNPEHLVKIRMPSSKLKKLWGG--IQPLPNLKSIDMSFSYSLKEIPNLSKATNLEIL 654

  Fly   208 DLSNC-SIKNLSGFFLDAMQNLEALNLSRNTELQFDSLSEDPILTYMLRKL--DVSYCNLDSIEL 269
            .|..| |:..|. |.:..:..||.||:...:               ||:.:  :::..:|:.:::
plant   655 SLEFCKSLVELP-FSILNLHKLEILNVENCS---------------MLKVIPTNINLASLERLDM 703

  Fly   270 SGLPQLTEVRLQGNLLRVVDVNTFANNSMLEVVDLSQNVLRHIGQDAFAKLKRLKELNLAFNEI- 333
            :|..:|               .||.        |:|.|:               |:|||....| 
plant   704 TGCSEL---------------RTFP--------DISSNI---------------KKLNLGDTMIE 730

  Fly   334 ---------ARLDRNFIRNNDV--------LVELNLSRNVLQKLTKIVSNSVRTINMSWCEITSI 381
                     :|||..:|.:..:        :..|.|.::.::.:.:.:....|   :.|..:.|.
plant   731 DVPPSVGCWSRLDHLYIGSRSLKRLHVPPCITSLVLWKSNIESIPESIIGLTR---LDWLNVNSC 792

  Fly   382 E--STALSSLSVIQKLDLSNNLITDMPTFMRSETLQQLNLANC-------RLTTVRNNTFR---- 433
            .  .:.|...|.:|.||.::.:......|.....::.|:..||       |...::.:.:|    
plant   793 RKLKSILGLPSSLQDLDANDCVSLKRVCFSFHNPIRALSFNNCLNLDEEARKGIIQQSVYRYICL 857

  Fly   434 ---EFPELADLHLNGNRLTSPIPP 454
               :.||.......|..:|.|:.|
plant   858 PGKKIPEEFTHKATGRSITIPLSP 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5819NP_001246458.1 leucine-rich repeat 56..78 CDD:275380
LRR_RI <58..236 CDD:238064 37/158 (23%)
LRR_8 78..141 CDD:290566 15/60 (25%)
leucine-rich repeat 79..102 CDD:275380 6/21 (29%)
leucine-rich repeat 103..130 CDD:275380 7/26 (27%)
leucine-rich repeat 131..155 CDD:275380 1/23 (4%)
LRR_8 156..214 CDD:290566 15/60 (25%)
leucine-rich repeat 158..182 CDD:275380 4/23 (17%)
LRR_8 202..285 CDD:290566 17/86 (20%)
leucine-rich repeat 204..227 CDD:275380 7/23 (30%)
leucine-rich repeat 254..274 CDD:275380 3/21 (14%)
LRR_8 273..333 CDD:290566 10/59 (17%)
leucine-rich repeat 275..298 CDD:275380 3/22 (14%)
LRR_RI 277..>471 CDD:238064 36/212 (17%)
leucine-rich repeat 299..322 CDD:275380 3/22 (14%)
LRR_8 321..402 CDD:290566 19/100 (19%)
leucine-rich repeat 323..346 CDD:275380 9/32 (28%)
leucine-rich repeat 347..391 CDD:275380 6/45 (13%)
leucine-rich repeat 392..413 CDD:275380 4/20 (20%)
LRR_8 393..448 CDD:290566 12/68 (18%)
leucine-rich repeat 414..437 CDD:275380 5/36 (14%)
LRRCT 471..517 CDD:214507
AT5G41750NP_198990.3 PLN03210 1..1033 CDD:215633 78/414 (19%)
TIR 13..178 CDD:279864
AAA_16 187..>231 CDD:289934
AAA 212..326 CDD:99707
LRR_3 604..623 CDD:285026 3/20 (15%)
leucine-rich repeat 628..650 CDD:275380 4/21 (19%)
leucine-rich repeat 651..674 CDD:275380 7/23 (30%)
leucine-rich repeat 675..697 CDD:275380 6/36 (17%)
leucine-rich repeat 698..718 CDD:275380 7/42 (17%)
leucine-rich repeat 719..751 CDD:275380 9/46 (20%)
leucine-rich repeat 752..783 CDD:275380 2/30 (7%)
leucine-rich repeat 784..815 CDD:275380 7/30 (23%)
leucine-rich repeat 816..837 CDD:275380 4/20 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.