DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5819 and si:dkey-90m5.4

DIOPT Version :10

Sequence 1:NP_611660.1 Gene:CG5819 / 37547 FlyBaseID:FBgn0034717 Length:915 Species:Drosophila melanogaster
Sequence 2:NP_001038237.1 Gene:si:dkey-90m5.4 / 553466 ZFINID:ZDB-GENE-041014-250 Length:327 Species:Danio rerio


Alignment Length:381 Identity:97/381 - (25%)
Similarity:133/381 - (34%) Gaps:121/381 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ALLVLGVISSCRAVNCPWPCRCTWVVDSLYADCSRRSLQTYPNFDGIPVEHLDLSGNKFLEFPTL 72
            ||.|:.|:.|..|::||..|.|.:...:....|....|..:|. ||:|.....|: .:|.....|
Zfish     8 ALAVMLVLCSRDALSCPKRCTCHFSAKTTEVVCPDAGLSHFPG-DGLPPSTTSLT-IQFTNLTVL 70

  Fly    73 YAD----IDSLIYLDLSSNYISSIGAKTLIGFTSLRTLLLANNSIDSWESLSPNEAFKYAPSLKR 133
            .::    :..|..|.|..|.:||:.|..|.....|.|:.|.:|.:..    .|...|::|| |..
Zfish    71 TSEHLRAVPLLEELHLPGNKLSSLPADILKDLKYLHTIDLTDNELRE----LPEYVFRHAP-LLN 130

  Fly   134 LGLDGNRLGSFGNGESFELLTSSSLTDLGLSSCGISSIGGDQMVNQLPNLERLNLANNQL----- 193
            |.|..||                           ||:|..|...|. .||..|:|:.|||     
Zfish   131 LVLKDNR---------------------------ISNIHPDWFPNN-SNLTWLDLSGNQLMKFPM 167

  Fly   194 AQIAALPSRTLRVLDLSNCSIKNLSGFFLDAMQNLEALNLSRNTELQFDSLSEDPILTYMLRKLD 258
            ||:..|  |.|:||.||...|:.|....|||...||.|.|.:|                .::.||
Zfish   168 AQLQNL--RHLKVLHLSQNKIEELPVGCLDAHTALERLYLDQN----------------KIQTLD 214

  Fly   259 VSYCNLDSIELSGLPQLTEVRLQGNLLRVVDVNTFANNSMLEVVDLSQNVLRHIGQDAFAKLKRL 323
            |.       ..||...||.:.||.|.:..:....|.....||.||||.|.|              
Zfish   215 VK-------AFSGSTNLTHIFLQKNRIDSLPPTVFQELKRLEYVDLSDNRL-------------- 258

  Fly   324 KELNLAFNEIARLDRNFIRNNDVLVELNLSRNVLQKLTKIVSNSVRTINMSWCEIT 379
                                                  :.:|..:..||.||.|:|
Zfish   259 --------------------------------------QFLSPGILDINTSWVELT 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5819NP_611660.1 RNA1 <56..193 CDD:444072 34/140 (24%)
leucine-rich repeat 56..78 CDD:275380 3/25 (12%)
leucine-rich repeat 79..102 CDD:275380 8/22 (36%)
leucine-rich repeat 103..130 CDD:275380 7/26 (27%)
leucine-rich repeat 131..155 CDD:275380 5/23 (22%)
LRR 134..>466 CDD:443914 61/251 (24%)
leucine-rich repeat 158..182 CDD:275380 5/23 (22%)
leucine-rich repeat 204..227 CDD:275380 10/22 (45%)
leucine-rich repeat 254..274 CDD:275380 5/19 (26%)
leucine-rich repeat 275..298 CDD:275380 6/22 (27%)
leucine-rich repeat 299..322 CDD:275380 8/22 (36%)
leucine-rich repeat 323..346 CDD:275380 0/22 (0%)
leucine-rich repeat 347..391 CDD:275380 7/33 (21%)
leucine-rich repeat 392..413 CDD:275380
leucine-rich repeat 414..437 CDD:275380
LRRCT 471..517 CDD:214507
si:dkey-90m5.4NP_001038237.1 leucine-rich repeat 57..80 CDD:275380 3/23 (13%)
LRR <65..>262 CDD:443914 72/306 (24%)
leucine-rich repeat 81..104 CDD:275380 8/22 (36%)
leucine-rich repeat 105..126 CDD:275380 6/24 (25%)
leucine-rich repeat 128..151 CDD:275380 10/50 (20%)
leucine-rich repeat 152..175 CDD:275380 9/24 (38%)
leucine-rich repeat 176..199 CDD:275380 10/22 (45%)
leucine-rich repeat 200..223 CDD:275380 10/45 (22%)
leucine-rich repeat 224..247 CDD:275380 6/22 (27%)
leucine-rich repeat 248..271 CDD:275380 11/74 (15%)
LRRCT 278..319 CDD:214507
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.