DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5819 and CG42346

DIOPT Version :10

Sequence 1:NP_611660.1 Gene:CG5819 / 37547 FlyBaseID:FBgn0034717 Length:915 Species:Drosophila melanogaster
Sequence 2:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster


Alignment Length:1194 Identity:266/1194 - (22%)
Similarity:435/1194 - (36%) Gaps:366/1194 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 DCSRRSLQTYPNFDGIPVEH---LDLSGNKFLEFPTLYADID-------------------SLIY 81
            |.|...|:|:|......::|   |.||.|:   .||.|.||.                   |||:
  Fly   403 DVSENGLRTFPLMALRKLDHLRILRLSNNR---IPTFYGDIQLATNNASAAAAAVGAFQLPSLIF 464

  Fly    82 LDLSSNYISSIGAKTLIGFTSLRTLLLANNSIDSWESLSPNEAFKYAPSLKRLGLDGNRL----- 141
            ||||||..:.||......|..|:||....|.|   |.:.| ||||....|..|.:..||:     
  Fly   465 LDLSSNQFAEIGPDCFRAFPQLKTLSFYANQI---ELVQP-EAFKSLRELMSLDMSHNRIIGLDP 525

  Fly   142 -----------------------GSFGN------------------GESFELLT----------- 154
                                   |.|.|                  .::|...|           
  Fly   526 KVFEKNKRLQTVDLSHNHIHTIGGVFSNLPQLREVFLSENNILELPADAFTNSTNVDVIYLESNA 590

  Fly   155 -----------------------------------SSSLTDLGLSSCGIS--SIGGDQMVNQLPN 182
                                               |:.||.|.|.:..|.  .||   |..:|.:
  Fly   591 IAHIDPNVFSTLVNLDHLYLRSNFIPLLPVTLFDKSTKLTSLSLDNNEIQDLEIG---MFRKLEH 652

  Fly   183 LERLNLANNQLAQI-----AALPSRTLRVLDLSNCSIKNLSGFFLDAMQNLEALNLSRNTELQFD 242
            |..:.|.||::.::     ..|||  |:.|.:...||:::.......::|::.:||..|.....:
  Fly   653 LREVRLHNNRIRRVRRGVFEPLPS--LQELHIQKNSIEDIEPQAFHTLENMQHINLQDNQLTVLE 715

  Fly   243 SLSEDPILTYMLRKLDVSYCN----------------------LDSIELS---GLPQLTEVRLQG 282
            .:..|...:.:..:|:.:|.:                      |..:|.|   ..|||..:.|..
  Fly   716 DIFPDENSSLLSVQLEANYLHKVHPRTFSRQQKVQIMWLKDNQLTRVERSFFADTPQLGRLYLSD 780

  Fly   283 NLLRVVDVNTFANNSMLEVVDLSQNVLRHIGQDAFAKLKRLKELNLAFNEIARLDRNFIRNNDVL 347
            |.:|.::.:||.|..:|:.:|||.|.||.:.:|.||.|:.|:||:||.|.|..::.........|
  Fly   781 NKIRDIEKDTFVNLLLLQFLDLSGNQLRQLRRDYFAPLQDLEELSLARNHIEAIEGYAFAKLKNL 845

  Fly   348 VELNLSRNVLQKLTK-IVSNS--VRTINMSWCEITSIESTALSSLSVIQKLDLSNNLIT------ 403
            ..|:||.|.|.:||: |.||.  :.::|:..|.:..:|..|..||:.:.:|:|..|.:.      
  Fly   846 KSLDLSHNPLVQLTRDIFSNEFPLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQLNPADIQT 910

  Fly   404 -DMPTFM-----------------------RSETLQQLNLANCRLTTVRNNTFREFPELADLHLN 444
             |:|...                       |..:||||:::||.|..:.:..|.:...|..|.|.
  Fly   911 LDIPNLRRLLLSHNNFSYAGSVGIMAGMLDRLRSLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLC 975

  Fly   445 GNRLTSPIPPNYFDGNKFLDQLWLGDNPWICDCHSPL----FVDFYDYLTAKPAKIKDRNHLRCA 505
            .||||. |..|.|.|.....:|.|        |.:.|    .:..|:..|.:...:. ||.|   
  Fly   976 DNRLTQ-INRNIFSGLNVFKELRL--------CRNELSDFPHIALYNLSTLESLDLA-RNQL--- 1027

  Fly   506 APAVFYG-----KLWEFACADVWILNARTSSTGEKAWSIIMLTLLGL-GALVLGYAC--LQKYLR 562
            |...|:.     .|.:....|    |..|:.:|..|.::..|..:.| |.|:|....  |:..:.
  Fly  1028 ASIDFFKLSGTLNLRQLILRD----NKITALSGFNAVNLTQLDSVDLSGNLLLSLPANFLRHSIN 1088

  Fly   563 KRKVRQSDREYEE------NDDELRRIRDLN------ERI--LREEATPSLQH----TQEISLLP 609
            .:||..|:..:.:      :|..:.|:..||      .||  ::||..|.|:.    ...:|:|.
  Fly  1089 LQKVHLSNNRFLQIPSSALSDVSIPRLSWLNLTGNPINRIYTVKEERYPYLKELYICQTNLSILT 1153

  Fly   610 SYE----DALRMPKLVR---------PVKSM-----MDLS-------GPERARNSRKLR-RSQTH 648
            |.:    .||:...||.         ..||:     :|||       ..||.:..|.|| .:.:|
  Fly  1154 SKDFEAFQALQHLHLVNNRITRISPGAFKSLTNLLTLDLSVNELEMLPKERLQGLRLLRFLNISH 1218

  Fly   649 ADGDGSQSEAEDGL----------QLD--SRQRFRSVE------MLSNR------DKERTAQYGP 689
            ......:..:.|.|          |||  |::.||::.      ::.||      |..|.     
  Fly  1219 NTLKDLEEFSVDLLEMQTLDLSFNQLDRISKKTFRNLHGLLELFLMGNRMTVLSNDAFRF----- 1278

  Fly   690 YRRTGYMEYNQSGSRRFSIEDSRFPAAHLKTQNLQSA------------EQIGNFQSYENSPYTK 742
            .|:...::..::......:|..|....:|:|..|:..            |.:.:.:.:..|..:.
  Fly  1279 LRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLEENPLHCSCDAQKLWEWLRDHRKWSLSMGSG 1343

  Fly   743 RKPKIAEIPPFKRVNMMADSVEFLTDPEYDEVGSKHGSPFAKRKPK----PPVLPPPTMKVSAQ- 802
            ....|..:..    .:..||:.:|......|:   .|..|.:.:|:    .|::|    |::.| 
  Fly  1344 AGRGIGGLTG----GLGGDSINYLRCEHPTEL---RGKVFGRMEPQQFCDAPLIP----KMAIQD 1397

  Fly   803 ------VYTLQQSPVLELDPAIEDYFSA------ARKQPSSSTIASDFQELDEPELKSLPDDNRS 855
                  |.:.|....|.|: ..|..:.|      ....|:|.. ....:::.:||.:...|..|.
  Fly  1398 IQPYSVVVSWQSRDHLGLN-GFEIVYHATGDGLVTAGSPTSRE-RDSLRDIHDPERQRTRDQARE 1460

  Fly   856 STISRS-DVEQDLER---------GKR--------KKRKNSTSRRV------SGSFTA---ANAA 893
            .:..|. |.|:|.||         |||        |..|.|.:.|.      ||::.:   |||.
  Fly  1461 RSRERDRDRERDRERFSIATDEIHGKRLNGTASSTKLTKLSPNTRYHICVIGSGNWLSEPLANAL 1525

  Fly   894 ESSSSDSELN----ALVHKPMRET 913
            :...::..|.    .::..|:.|:
  Fly  1526 QRLHTNESLREEEAVMMSAPLPES 1549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5819NP_611660.1 RNA1 <56..193 CDD:444072 56/252 (22%)
leucine-rich repeat 56..78 CDD:275380 10/43 (23%)
leucine-rich repeat 79..102 CDD:275380 11/22 (50%)
leucine-rich repeat 103..130 CDD:275380 11/26 (42%)
leucine-rich repeat 131..155 CDD:275380 9/115 (8%)
LRR 134..>466 CDD:443914 108/488 (22%)
leucine-rich repeat 158..182 CDD:275380 9/25 (36%)
leucine-rich repeat 204..227 CDD:275380 4/22 (18%)
leucine-rich repeat 254..274 CDD:275380 5/44 (11%)
leucine-rich repeat 275..298 CDD:275380 7/22 (32%)
leucine-rich repeat 299..322 CDD:275380 11/22 (50%)
leucine-rich repeat 323..346 CDD:275380 7/22 (32%)
leucine-rich repeat 347..391 CDD:275380 17/46 (37%)
leucine-rich repeat 392..413 CDD:275380 6/50 (12%)
leucine-rich repeat 414..437 CDD:275380 8/22 (36%)
LRRCT 471..517 CDD:214507 10/54 (19%)
CG42346NP_001036303.2 LRR <301..606 CDD:443914 47/209 (22%)
leucine-rich repeat 303..325 CDD:275380
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380 15/60 (25%)
leucine-rich repeat 399..422 CDD:275380 5/18 (28%)
leucine-rich repeat 462..485 CDD:275380 11/22 (50%)
LRR 486..>736 CDD:443914 48/258 (19%)
leucine-rich repeat 486..509 CDD:275380 11/26 (42%)
leucine-rich repeat 510..533 CDD:275380 4/22 (18%)
leucine-rich repeat 534..556 CDD:275380 3/21 (14%)
leucine-rich repeat 557..580 CDD:275380 1/22 (5%)
leucine-rich repeat 581..604 CDD:275380 0/22 (0%)
leucine-rich repeat 605..628 CDD:275380 1/22 (5%)
PPP1R42 627..860 CDD:455733 64/237 (27%)
leucine-rich repeat 629..652 CDD:275380 9/25 (36%)
leucine-rich repeat 653..676 CDD:275380 5/22 (23%)
leucine-rich repeat 677..700 CDD:275380 4/22 (18%)
leucine-rich repeat 701..748 CDD:275380 6/46 (13%)
leucine-rich repeat 725..736 CDD:275378 2/10 (20%)
leucine-rich repeat 749..772 CDD:275380 3/22 (14%)
leucine-rich repeat 773..793 CDD:275380 6/19 (32%)
leucine-rich repeat 821..844 CDD:275380 7/22 (32%)
leucine-rich repeat 845..868 CDD:275380 11/22 (50%)
LRR 869..1226 CDD:443914 85/373 (23%)
leucine-rich repeat 869..892 CDD:275380 6/22 (27%)
leucine-rich repeat 893..915 CDD:275380 4/21 (19%)
leucine-rich repeat 916..944 CDD:275380 1/27 (4%)
leucine-rich repeat 945..968 CDD:275380 8/22 (36%)
leucine-rich repeat 969..992 CDD:275380 11/23 (48%)
leucine-rich repeat 993..1014 CDD:275380 5/28 (18%)
leucine-rich repeat 1017..1040 CDD:275380 5/26 (19%)
leucine-rich repeat 1041..1064 CDD:275380 6/26 (23%)
leucine-rich repeat 1089..1114 CDD:275380 4/24 (17%)
leucine-rich repeat 1115..1162 CDD:275380 11/46 (24%)
PPP1R42 1155..1317 CDD:455733 33/166 (20%)
leucine-rich repeat 1163..1186 CDD:275380 5/22 (23%)
leucine-rich repeat 1187..1210 CDD:275380 5/22 (23%)
leucine-rich repeat 1211..1233 CDD:275380 4/21 (19%)
leucine-rich repeat 1234..1257 CDD:275380 6/22 (27%)
leucine-rich repeat 1258..1279 CDD:275380 4/25 (16%)
leucine-rich repeat 1282..1306 CDD:275380 2/23 (9%)
Blue background indicates that the domain is not in the aligned region.

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