DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5819 and sym-1

DIOPT Version :9

Sequence 1:NP_001246458.1 Gene:CG5819 / 37547 FlyBaseID:FBgn0034717 Length:915 Species:Drosophila melanogaster
Sequence 2:NP_510426.1 Gene:sym-1 / 181555 WormBaseID:WBGene00006366 Length:680 Species:Caenorhabditis elegans


Alignment Length:805 Identity:167/805 - (20%)
Similarity:275/805 - (34%) Gaps:213/805 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRIVLELALLVLGVISSCRAVNCP------WPCRCTWVVDSLYADCS----RRSLQTYPNFDGIP 55
            |.:.|.:|||||   .:|.|. ||      ..|.|...|:.....||    .|.::.......:.
 Worm     1 MLLRLCVALLVL---PACLAF-CPKLFQNQTACSCDSTVEGPVIKCSGHDGLRMVEKLSTTTTME 61

  Fly    56 VEHLDLSGNKFLE-----FPTLYADIDSLIYLDLSSNYISSIGAKTLIGFTS-LRTLLLANNSID 114
            |..|.|.....:|     |.||  .|..||   ||:|.|..|......|..: ::.|.|:.|::.
 Worm    62 VRELALENADIIEVGPKAFKTL--RIKKLI---LSNNRIEKIHDHAFTGLENVMQELSLSENNLK 121

  Fly   115 SWESLSPNEAFKYAPSLKRLGLDGNRLGSFGNGESFELLTSSSLTDLGLSSCGISSIGGDQMVNQ 179
            .    .|..|......|..|.|..|::.:. ..::|..:|  ||.|:.|....|.|:..|...|.
 Worm   122 E----VPTSALAGLRVLNILSLKCNKIENI-TTKAFVNMT--SLIDVNLGCNQICSMAADTFANV 179

  Fly   180 LPNLERLNLANNQLAQIAALPSRTLRVLDLSNCSIKNLSGFFLDAMQNLEALNLSRNTELQFDSL 244
            ..:|:.|.|.||.:.:   .||:.:|                  .|.||.||::..|        
 Worm   180 KMSLQNLILDNNCMTE---FPSKAVR------------------NMNNLIALHIKYN-------- 215

  Fly   245 SEDPILTYMLRKLDVSYCNLDSIELSGLPQLTEVRLQGNLLRVVDVNTFANNSMLEVVDLSQNVL 309
                       |::....| |.:.|:.|..|:   |.||.:..:......|...|..:.|::|.|
 Worm   216 -----------KINAIRQN-DFVNLTSLSMLS---LNGNNISEIKGGALQNTPNLHYLYLNENNL 265

  Fly   310 RHIGQDAFAKLKRLKELNLAFNEIARLDRNFIRNNDVLVELNLSRNVLQKLTKIVSNSVRTINMS 374
            :.:......:.|:|:.|:|:||....:.:......:.:..|||..|                   
 Worm   266 QTLDNGVLEQFKQLQVLDLSFNNFTDITKEMFEGLESIQHLNLDSN------------------- 311

  Fly   375 WCEITSIESTALSSLSVIQKLDLSNNLITDM--PTFMRSETLQQLNLANCRLTTVRNNTFREFPE 437
              .|:::...|.:...:: .|.|.||.:|::  .|...:..|:.::|:|..:..|...:|...|.
 Worm   312 --RISAVAPGAFAGTPLL-LLWLPNNCLTEVSQQTLKGAPFLRMVSLSNNNIREVHELSFDHLPN 373

  Fly   438 LADLHLNGNRLTSPIPPNYFDGNKFLD-----QLWLGDNPWICDCHSPLFVDFYDYLTAKPAKIK 497
            |..|.|..|::.|.       .||.|.     .:.|.:||.:|                    :|
 Worm   374 LHTLDLANNKIMSL-------QNKSLSGPENLAVRLQENPVVC--------------------VK 411

  Fly   498 DRNHLRCAAPAVFY---------GKLWEFACADVW----------------ILNARTSST----- 532
            :..|:..:..|::.         |: |:...||:.                |....|::|     
 Worm   412 NGFHVLNSGEAIWLTNEANTICKGE-WQAQTADLCPKAQPRPIRPVCCSNEITTTTTTTTTTTTL 475

  Fly   533 ----------GEKAWSIIMLTLLGLGALVLGYACLQKYLRKRKVRQSDREYEENDDELRRIRDLN 587
                      .|...:...:|.:|               :.:|.:.:....|..|||...:.|..
 Worm   476 APTTTTEEEKEETTETTEKVTTVG---------------KSKKTKATTTTEEPEDDEDVYVDDDE 525

  Fly   588 ERILREE----ATPSLQHTQEISLLPSYEDALRMPKLVRPVKSMMDLSGPERARNSRKLRRSQTH 648
            |....||    .|.....|...:...|....:.|.:..|........|...|.....|.|..||.
 Worm   526 EGTEEEEEEVSTTEKSTTTTTTTTEASKSKKVNMERFWRLSNKPSGKSPFLRHSQGNKPRYLQTT 590

  Fly   649 ADGDGSQSEAE----DGLQLDSRQRFRSVEMLSN---------RDKERTAQY-------GPYRRT 693
            .:....:.|||    ||...:|.:...:|...:.         |.:||...:       .|..:|
 Worm   591 TEAPEEEDEAEYISDDGGAEESEEAETTVATTTTTEPSVKVPARIRERQRMFASNIPWMAPRTKT 655

  Fly   694 GYMEYNQSGSRRF-SIEDSRFPAAH 717
            ..:|...|..... ::|.:..||.|
 Worm   656 DSVEEEFSKDDEVETVETAEKPARH 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5819NP_001246458.1 leucine-rich repeat 56..78 CDD:275380 8/26 (31%)
LRR_RI <58..236 CDD:238064 47/183 (26%)
LRR_8 78..141 CDD:290566 17/63 (27%)
leucine-rich repeat 79..102 CDD:275380 8/22 (36%)
leucine-rich repeat 103..130 CDD:275380 5/26 (19%)
leucine-rich repeat 131..155 CDD:275380 5/23 (22%)
LRR_8 156..214 CDD:290566 16/57 (28%)
leucine-rich repeat 158..182 CDD:275380 7/23 (30%)
LRR_8 202..285 CDD:290566 16/82 (20%)
leucine-rich repeat 204..227 CDD:275380 2/22 (9%)
leucine-rich repeat 254..274 CDD:275380 5/19 (26%)
LRR_8 273..333 CDD:290566 15/59 (25%)
leucine-rich repeat 275..298 CDD:275380 5/22 (23%)
LRR_RI 277..>471 CDD:238064 41/200 (21%)
leucine-rich repeat 299..322 CDD:275380 4/22 (18%)
LRR_8 321..402 CDD:290566 16/80 (20%)
leucine-rich repeat 323..346 CDD:275380 5/22 (23%)
leucine-rich repeat 347..391 CDD:275380 6/43 (14%)
leucine-rich repeat 392..413 CDD:275380 6/22 (27%)
LRR_8 393..448 CDD:290566 16/56 (29%)
leucine-rich repeat 414..437 CDD:275380 5/22 (23%)
LRRCT 471..517 CDD:214507 8/54 (15%)
sym-1NP_510426.1 leucine-rich repeat 62..81 CDD:275380 4/18 (22%)
LRR_5 74..208 CDD:290045 42/166 (25%)
LRR_RI 81..384 CDD:238064 86/380 (23%)
leucine-rich repeat 86..108 CDD:275380 8/24 (33%)
leucine-rich repeat 110..133 CDD:275380 5/26 (19%)
leucine-rich repeat 134..157 CDD:275380 6/25 (24%)
leucine-rich repeat 158..182 CDD:275380 7/23 (30%)
LRR_8 182..241 CDD:290566 23/102 (23%)
leucine-rich repeat 183..206 CDD:275380 9/43 (21%)
leucine-rich repeat 207..230 CDD:275380 8/42 (19%)
leucine-rich repeat 231..254 CDD:275380 6/25 (24%)
LRR_8 253..313 CDD:290566 14/80 (18%)
leucine-rich repeat 255..278 CDD:275380 4/22 (18%)
leucine-rich repeat 279..302 CDD:275380 5/22 (23%)
LRR_8 302..384 CDD:290566 22/103 (21%)
leucine-rich repeat 303..323 CDD:275380 6/40 (15%)
leucine-rich repeat 350..373 CDD:275380 5/22 (23%)
leucine-rich repeat 374..394 CDD:275380 8/26 (31%)
leucine-rich repeat 399..410 CDD:275378 4/30 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156339
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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