DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Swim and Ctsll3

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_081620.2 Gene:Ctsll3 / 70202 MGIID:1917452 Length:331 Species:Mus musculus


Alignment Length:257 Identity:81/257 - (31%)
Similarity:125/257 - (48%) Gaps:31/257 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 RVKAMTRL-KNPTDG-LPSSFNALDKWSSYISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKEN 235
            :.|.|.:: :.|..| :|.|.:..|  ..|::.|.|||.||:.|..|  :|.|....:..|..:.
Mouse    99 KTKMMMKVFQEPLLGDVPKSVDWRD--HGYVTPVKDQGSCGSCWAFS--AVGSLEGQMFRKTGKL 159

  Fly   236 VQLSAQNILSCTRRQ--QGCEGGHLDAAWRYLHKKGVVDEN-CYPYTQHRDTCKIRHNSRSLRAN 297
            |.||.||::.|:..|  |||:||..|.|::|:...|.:|.: .|||.....||:....:.:....
Mouse   160 VPLSVQNLVDCSWSQGNQGCDGGLPDLAFQYVKDNGGLDTSVSYPYEALNGTCRYNPKNSAATVT 224

  Fly   298 GCQKPVNVDRDSLYTVGPAYSLNREADIMAEIFHSGPVQATMRV-NRDFFAYSGGVYRETAANRK 361
            |.   |||.             :.|..:|..:...||:...:.. ::.|..|..|:|.|...:..
Mouse   225 GF---VNVQ-------------SSEDALMKAVATVGPISVGIDTKHKSFQFYKEGMYYEPDCSST 273

  Fly   362 APTGFHSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYFRILRG-SNECGIEEYVLASWPYV 422
            ...  |:|.:||:|||.:|.|||:..||||..||.:||.::.:. :|.|||...  ||:|.|
Mouse   274 VLD--HAVLVVGYGEESDGRKYWLVKNSWGRDWGMNGYIKMAKDRNNNCGIASD--ASYPVV 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 73/233 (31%)
Ctsll3NP_081620.2 Inhibitor_I29 29..87 CDD:214853
Peptidase_C1 115..330 CDD:425470 75/238 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.