DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and Ctsf

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_063914.1 Gene:Ctsf / 56464 MGIID:1861434 Length:462 Species:Mus musculus


Alignment Length:244 Identity:70/244 - (28%)
Similarity:107/244 - (43%) Gaps:35/244 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 KAMTRLKNPTDGLPSSFNALDKWSSYISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLS 239
            :.|:..|:..|..|..::...|.:  ::||.:||.||:.|..|.|.....::.: ::| ..:.||
Mouse   237 RKMSPAKSINDLAPPEWDWRKKGA--VTEVKNQGMCGSCWAFSVTGNVEGQWFL-NRG-TLLSLS 297

  Fly   240 AQNILSCTRRQQGCEGGHLDAAWRYLHKKGVVD-ENCYPYTQHRDTCKIRHNSRSLRANGCQKPV 303
            .|.:|.|.:..:.|.||....|:..:...|.:: |:.|.|..|..||........:..|      
Mouse   298 EQELLDCDKVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQGHVQTCNFSAQMAKVYIN------ 356

  Fly   304 NVDRDSLYTVGPAYSLNR-EADIMAEIFHSGPVQATMRVNRDFFAYSGGVYRETAANRKAPTGF- 366
                ||:       .|:| |..|.|.:...||:...:.      |:....||...|:...|... 
Mouse   357 ----DSV-------ELSRNENKIAAWLAQKGPISVAIN------AFGMQFYRHGIAHPFRPLCSP 404

  Fly   367 ----HSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYFRILRGSNECGI 411
                |:|.|||:|...| ..||...|||||.|||.||:.:.|||..||:
Mouse   405 WFIDHAVLLVGYGNRSN-IPYWAIKNSWGSDWGEEGYYYLYRGSGACGV 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 67/231 (29%)
CtsfNP_063914.1 Inhibitor_I29 165..221 CDD:214853
Peptidase_C1 249..460 CDD:425470 67/232 (29%)
Blue background indicates that the domain is not in the aligned region.

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