DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and CtsF

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_730901.1 Gene:CtsF / 40628 FlyBaseID:FBgn0260462 Length:614 Species:Drosophila melanogaster


Alignment Length:233 Identity:71/233 - (30%)
Similarity:102/233 - (43%) Gaps:26/233 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 LPSSFNALDKWSSYISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCTRRQQ 251
            ||..|:...|  ..:::|.:||.||:.|..|.|......:|:  |..|..:.|.|.:|.|.....
  Fly   394 LPKEFDWRQK--DAVTQVKNQGSCGSCWAFSVTGNIEGLYAV--KTGELKEFSEQELLDCDTTDS 454

  Fly   252 GCEGGHLDAAWRYLHKKGVVD-ENCYPYTQHRDTCKIRHNSRSLRANGCQKPVNVDRDSLYTVGP 315
            .|.||.:|.|::.:...|.:: |..|||...::.|   |.:|:|  :..|....||...      
  Fly   455 ACNGGLMDNAYKAIKDIGGLEYEAEYPYKAKKNQC---HFNRTL--SHVQVAGFVDLPK------ 508

  Fly   316 AYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSGGVYRETAANRKAPTGFHSVKLVGWGEE--- 377
                ..|..:...:..:||:...:..|...| |.|||.....|........|.|.:||:|..   
  Fly   509 ----GNETAMQEWLLANGPISIGINANAMQF-YRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYP 568

  Fly   378 --HNGEKYWIAANSWGSWWGEHGYFRILRGSNECGIEE 413
              |....|||..||||..|||.||:|:.||.|.||:.|
  Fly   569 NFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSE 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 70/232 (30%)
CtsFNP_730901.1 Inhibitor_I29 308..365 CDD:462410
Peptidase_C1A 395..611 CDD:239068 70/232 (30%)
Blue background indicates that the domain is not in the aligned region.

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