DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and ctsc

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_999887.1 Gene:ctsc / 368704 ZFINID:ZDB-GENE-030619-9 Length:455 Species:Danio rerio


Alignment Length:308 Identity:97/308 - (31%)
Similarity:145/308 - (47%) Gaps:44/308 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 VHSVNSIHRLGWSARKYDQWWGRKYSEGLKL-----RLGTKEPTYRVKAMTRL------KNPTDG 186
            |..:||:.: .|:|..|      .:.|.|.:     |.|  .|..|:....|.      .....|
Zfish   168 VDEINSVQK-SWTATAY------SFHETLSIHEMLRRSG--GPASRIPRRVRPVTVAADSKAASG 223

  Fly   187 LPSSFNALDKWS-----SYISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSC 246
            ||..::    |.     :::|.|.:|..||:.:..:|..:...|..||:...:....|.|.::||
Zfish   224 LPQHWD----WRNVNGVNFVSPVRNQAQCGSCYSFATMGMLEARVRIQTNNTQQPVFSPQQVVSC 284

  Fly   247 TRRQQGCEGGHLDAAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQKPVNVDRDSLY 311
            ::..|||:||......:|:...|:|:|:|:|||.....|.:...        |.|....|   .:
Zfish   285 SQYSQGCDGGFPYLIGKYIQDFGIVEEDCFPYTGSDSPCNLPAK--------CTKYYASD---YH 338

  Fly   312 TVGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSGGVYRETA---ANRKAPTGFHSVKLVG 373
            .||..|....|:.:|.|:..:||:...:.|..||..|..|:|..|.   ||.......|:|.|||
Zfish   339 YVGGFYGGCSESAMMLELVKNGPMGVALEVYPDFMNYKEGIYHHTGLRDANNPFELTNHAVLLVG 403

  Fly   374 WGEEH-NGEKYWIAANSWGSWWGEHGYFRILRGSNECGIEEYVLASWP 420
            :|:.| .||||||..|||||.|||:|:|||.||::||.||...:|:.|
Zfish   404 YGQCHKTGEKYWIVKNSWGSGWGENGFFRIRRGTDECAIESIAVAATP 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 80/237 (34%)
ctscNP_999887.1 CathepsinC_exc 19..132 CDD:462598
Peptidase_C1A_CathepsinC 224..452 CDD:239112 83/243 (34%)
Blue background indicates that the domain is not in the aligned region.

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