DRSC/TRiP Functional Genomics Resources

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Protein Alignment Swim and Testin

DIOPT Version :10

Sequence 1:NP_611652.2 Gene:Swim / 37537 FlyBaseID:FBgn0034709 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_775155.1 Gene:Testin / 286916 RGDID:708447 Length:333 Species:Rattus norvegicus


Alignment Length:232 Identity:72/232 - (31%)
Similarity:106/232 - (45%) Gaps:32/232 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 YISEVPDQGWCGASWVLSTT-SVASDRFAIQSKGKENVQLSAQNILSC--TRRQQGCEGGHLDAA 261
            |::.|.:||.|.:||..|.| |:....|   .|.:..:.||.||:|.|  :....||.||.:..|
  Rat   125 YVTPVKNQGHCASSWAFSATGSLEGQMF---RKTERLIPLSEQNLLDCMGSNVTHGCSGGFMQYA 186

  Fly   262 WRYLHKK-GVVDENCYPYTQHRDTCKIRHNSRSLRANGCQKPVNVDRDSLYTVGPAYSLNREADI 325
            ::|:... |:..|..|||         |...|..|.:......|| ||.:...|      .|..:
  Rat   187 FQYVKDNGGLATEESYPY---------RGQGRECRYHAENSAANV-RDFVQIPG------SEEAL 235

  Fly   326 MAEIFHSGPVQATMRVNRDFFA-YSGGVYRETAANRKAPTGFHSVKLVGW---GEEHNGEKYWIA 386
            |..:...||:...:..:...|. |..|:|.|....|....  |:|.:||:   |||.:|..:|:.
  Rat   236 MKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLN--HAVLVVGYGFEGEESDGNSFWLV 298

  Fly   387 ANSWGSWWGEHGYFRILRG-SNECGIEEYVLASWPYV 422
            .||||..||..||.::.:. ||.|||..|  :::|.|
  Rat   299 KNSWGEEWGMKGYMKLAKDWSNHCGIATY--STYPIV 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SwimNP_611652.2 Somatomedin_B 41..84 CDD:460034
Peptidase_C1A_CathepsinB 188..417 CDD:239111 70/225 (31%)
TestinNP_775155.1 Inhibitor_I29 29..87 CDD:214853
Peptidase_C1 114..332 CDD:425470 70/229 (31%)
Blue background indicates that the domain is not in the aligned region.

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